snakemake version >= 6.2.1 python version >= 3.7 added snakeMake in readme bug fix 777, 781 multiqc version = 1.10.1 to be able to report qc fir hic pipeline added snakemake catalog yam
snakePipes 2.4.3 Fixed noncoding-RNA-seq workflow without sample sheet. Updated links to prebuilt i...
A number of minor bug fixes across all of the pipelines Updates of all tool versions and switching t...
The initial production release, supporting RNA-seq, ChIP-seq, scRNA-seq (Cel-seq2), ATAC-seq and mor...
Documentation updates A few minor bug fixes, such as a multiQC input in the HiC pipelin
Snakemake version is bumped to 5.13.0 Updated docs on running single snakefiles Added user-input tar...
snakePipes 2.2.2 Fix DAG inconsistencies for ChIP-seq and ATAC-seq ran fromBAM and from -d. DESeq2 ...
snakePipes 2.2.2 Fix DAG inconsistencies for ChIP-seq and ATAC-seq ran fromBAM and from -d. DESeq2 ...
snakePipes 2.5.4 Fixed a number of minor GitHub issues: #791, #816, #807, #789, #783, #768, #827. ...
snakePipes 2.3.1 Fixed aligner options for bwa in DNA-mapping. Fixed allelic mode for single end re...
Updated Bowtie2 parameters for the cut and tag data Updated multibamSummary in ChIPSeq pipeline for ...
snakePipes 2.2.1 Fix a bug in DAG for ChIPseq allelic with CSAW. Fixed deepTools qc DAG for ChIPseq...
Various bug fixes, adds the --notemp option to all pipelines. Most importantly, we no longer need to...
A second alpha release. This has various bug fixes and now modifies snakemake so that temporary file...
A couple of bugs were fixed including: Error messages from sample checks interfering with DAG creat...
Updated citation for snakePipes Fixed replicate check for samples with trailing spaces in names Fixe...
snakePipes 2.4.3 Fixed noncoding-RNA-seq workflow without sample sheet. Updated links to prebuilt i...
A number of minor bug fixes across all of the pipelines Updates of all tool versions and switching t...
The initial production release, supporting RNA-seq, ChIP-seq, scRNA-seq (Cel-seq2), ATAC-seq and mor...
Documentation updates A few minor bug fixes, such as a multiQC input in the HiC pipelin
Snakemake version is bumped to 5.13.0 Updated docs on running single snakefiles Added user-input tar...
snakePipes 2.2.2 Fix DAG inconsistencies for ChIP-seq and ATAC-seq ran fromBAM and from -d. DESeq2 ...
snakePipes 2.2.2 Fix DAG inconsistencies for ChIP-seq and ATAC-seq ran fromBAM and from -d. DESeq2 ...
snakePipes 2.5.4 Fixed a number of minor GitHub issues: #791, #816, #807, #789, #783, #768, #827. ...
snakePipes 2.3.1 Fixed aligner options for bwa in DNA-mapping. Fixed allelic mode for single end re...
Updated Bowtie2 parameters for the cut and tag data Updated multibamSummary in ChIPSeq pipeline for ...
snakePipes 2.2.1 Fix a bug in DAG for ChIPseq allelic with CSAW. Fixed deepTools qc DAG for ChIPseq...
Various bug fixes, adds the --notemp option to all pipelines. Most importantly, we no longer need to...
A second alpha release. This has various bug fixes and now modifies snakemake so that temporary file...
A couple of bugs were fixed including: Error messages from sample checks interfering with DAG creat...
Updated citation for snakePipes Fixed replicate check for samples with trailing spaces in names Fixe...
snakePipes 2.4.3 Fixed noncoding-RNA-seq workflow without sample sheet. Updated links to prebuilt i...
A number of minor bug fixes across all of the pipelines Updates of all tool versions and switching t...
The initial production release, supporting RNA-seq, ChIP-seq, scRNA-seq (Cel-seq2), ATAC-seq and mor...
DOI
Add to ORKG