Various bug fixes, adds the --notemp option to all pipelines. Most importantly, we no longer need to modify snakemake to handle permission issues
snakePipes 2.2.2 Fix DAG inconsistencies for ChIP-seq and ATAC-seq ran fromBAM and from -d. DESeq2 ...
snakePipes 2.4.3 Fixed noncoding-RNA-seq workflow without sample sheet. Updated links to prebuilt i...
A wide number of bug fixes to scRNA-seq and other pipelines. In particular, many memory limits were ...
A second alpha release. This has various bug fixes and now modifies snakemake so that temporary file...
A number of minor bug fixes across all of the pipelines Updates of all tool versions and switching t...
Documentation updates A few minor bug fixes, such as a multiQC input in the HiC pipelin
The initial production release, supporting RNA-seq, ChIP-seq, scRNA-seq (Cel-seq2), ATAC-seq and mor...
Snakemake version is bumped to 5.13.0 Updated docs on running single snakefiles Added user-input tar...
A couple of bugs were fixed including: Error messages from sample checks interfering with DAG creat...
This is the first alpha release going toward version 1.0. The workflows seem to all work, but we sti...
snakemake version >= 6.2.1 python version >= 3.7 added snakeMake in readme bug fix 777, 781 multiqc ...
snakePipes 2.2.2 Fix DAG inconsistencies for ChIP-seq and ATAC-seq ran fromBAM and from -d. DESeq2 ...
Fixed some conda environments so they could all be solved in a reasonable amount of time. Updated so...
snakePipes 2.3.1 Fixed aligner options for bwa in DNA-mapping. Fixed allelic mode for single end re...
snakePipes 2.4.2 Deeptools coverage RPKM in mRNA-seq and noncoding-RNA-seq worflows now respects bl...
snakePipes 2.2.2 Fix DAG inconsistencies for ChIP-seq and ATAC-seq ran fromBAM and from -d. DESeq2 ...
snakePipes 2.4.3 Fixed noncoding-RNA-seq workflow without sample sheet. Updated links to prebuilt i...
A wide number of bug fixes to scRNA-seq and other pipelines. In particular, many memory limits were ...
A second alpha release. This has various bug fixes and now modifies snakemake so that temporary file...
A number of minor bug fixes across all of the pipelines Updates of all tool versions and switching t...
Documentation updates A few minor bug fixes, such as a multiQC input in the HiC pipelin
The initial production release, supporting RNA-seq, ChIP-seq, scRNA-seq (Cel-seq2), ATAC-seq and mor...
Snakemake version is bumped to 5.13.0 Updated docs on running single snakefiles Added user-input tar...
A couple of bugs were fixed including: Error messages from sample checks interfering with DAG creat...
This is the first alpha release going toward version 1.0. The workflows seem to all work, but we sti...
snakemake version >= 6.2.1 python version >= 3.7 added snakeMake in readme bug fix 777, 781 multiqc ...
snakePipes 2.2.2 Fix DAG inconsistencies for ChIP-seq and ATAC-seq ran fromBAM and from -d. DESeq2 ...
Fixed some conda environments so they could all be solved in a reasonable amount of time. Updated so...
snakePipes 2.3.1 Fixed aligner options for bwa in DNA-mapping. Fixed allelic mode for single end re...
snakePipes 2.4.2 Deeptools coverage RPKM in mRNA-seq and noncoding-RNA-seq worflows now respects bl...
snakePipes 2.2.2 Fix DAG inconsistencies for ChIP-seq and ATAC-seq ran fromBAM and from -d. DESeq2 ...
snakePipes 2.4.3 Fixed noncoding-RNA-seq workflow without sample sheet. Updated links to prebuilt i...
A wide number of bug fixes to scRNA-seq and other pipelines. In particular, many memory limits were ...
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