A couple of bugs were fixed including: Error messages from sample checks interfering with DAG creation fastqc with --fromBAM WGBS metilene groups and density plots HiCExplorer function calls outdated commands in zenodo links
A number of minor bug fixes across all of the pipelines Updates of all tool versions and switching t...
snakemake version >= 6.2.1 python version >= 3.7 added snakeMake in readme bug fix 777, 781 multiqc ...
The initial production release, supporting RNA-seq, ChIP-seq, scRNA-seq (Cel-seq2), ATAC-seq and mor...
Snakemake version is bumped to 5.13.0 Updated docs on running single snakefiles Added user-input tar...
snakePipes 2.2.2 Fix DAG inconsistencies for ChIP-seq and ATAC-seq ran fromBAM and from -d. DESeq2 ...
snakePipes 2.2.2 Fix DAG inconsistencies for ChIP-seq and ATAC-seq ran fromBAM and from -d. DESeq2 ...
A second alpha release. This has various bug fixes and now modifies snakemake so that temporary file...
Documentation updates A few minor bug fixes, such as a multiQC input in the HiC pipelin
Various bug fixes, adds the --notemp option to all pipelines. Most importantly, we no longer need to...
snakePipes 2.2.1 Fix a bug in DAG for ChIPseq allelic with CSAW. Fixed deepTools qc DAG for ChIPseq...
snakePipes 2.2.3 Genrich will now run if sampleSheet without replicates is provided. Updated zenodo...
snakePipes 2.4.3 Fixed noncoding-RNA-seq workflow without sample sheet. Updated links to prebuilt i...
Updated citation for snakePipes Fixed replicate check for samples with trailing spaces in names Fixe...
A wide number of bug fixes to scRNA-seq and other pipelines. In particular, many memory limits were ...
snakePipes 2.4.2 Deeptools coverage RPKM in mRNA-seq and noncoding-RNA-seq worflows now respects bl...
A number of minor bug fixes across all of the pipelines Updates of all tool versions and switching t...
snakemake version >= 6.2.1 python version >= 3.7 added snakeMake in readme bug fix 777, 781 multiqc ...
The initial production release, supporting RNA-seq, ChIP-seq, scRNA-seq (Cel-seq2), ATAC-seq and mor...
Snakemake version is bumped to 5.13.0 Updated docs on running single snakefiles Added user-input tar...
snakePipes 2.2.2 Fix DAG inconsistencies for ChIP-seq and ATAC-seq ran fromBAM and from -d. DESeq2 ...
snakePipes 2.2.2 Fix DAG inconsistencies for ChIP-seq and ATAC-seq ran fromBAM and from -d. DESeq2 ...
A second alpha release. This has various bug fixes and now modifies snakemake so that temporary file...
Documentation updates A few minor bug fixes, such as a multiQC input in the HiC pipelin
Various bug fixes, adds the --notemp option to all pipelines. Most importantly, we no longer need to...
snakePipes 2.2.1 Fix a bug in DAG for ChIPseq allelic with CSAW. Fixed deepTools qc DAG for ChIPseq...
snakePipes 2.2.3 Genrich will now run if sampleSheet without replicates is provided. Updated zenodo...
snakePipes 2.4.3 Fixed noncoding-RNA-seq workflow without sample sheet. Updated links to prebuilt i...
Updated citation for snakePipes Fixed replicate check for samples with trailing spaces in names Fixe...
A wide number of bug fixes to scRNA-seq and other pipelines. In particular, many memory limits were ...
snakePipes 2.4.2 Deeptools coverage RPKM in mRNA-seq and noncoding-RNA-seq worflows now respects bl...
A number of minor bug fixes across all of the pipelines Updates of all tool versions and switching t...
snakemake version >= 6.2.1 python version >= 3.7 added snakeMake in readme bug fix 777, 781 multiqc ...
The initial production release, supporting RNA-seq, ChIP-seq, scRNA-seq (Cel-seq2), ATAC-seq and mor...
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