snakePipes 2.4.3 Fixed noncoding-RNA-seq workflow without sample sheet. Updated links to prebuilt indices on zenodo. Fixed read length estimation for rMats. Cutadapt is set as default read trimming program for both noncoding-RNA-seq and mRNA-seq workflows
A couple of bugs were fixed including: Error messages from sample checks interfering with DAG creat...
snakePipes 2.3.1 Fixed aligner options for bwa in DNA-mapping. Fixed allelic mode for single end re...
snakePipes 2.5.4 Fixed a number of minor GitHub issues: #791, #816, #807, #789, #783, #768, #827. ...
RNAseq workflow is now called mRNA-seq added noncoding-RNA-seq workflow added STARsolo mode to scRNA...
snakePipes 2.4.0 Added support for multiple pairwise comparisons for DESeq2, sleuth, and rMats in t...
snakePipes 2.4.2 Deeptools coverage RPKM in mRNA-seq and noncoding-RNA-seq worflows now respects bl...
The initial production release, supporting RNA-seq, ChIP-seq, scRNA-seq (Cel-seq2), ATAC-seq and mor...
snakePipes 2.2.2 Fix DAG inconsistencies for ChIP-seq and ATAC-seq ran fromBAM and from -d. DESeq2 ...
snakePipes 2.2.2 Fix DAG inconsistencies for ChIP-seq and ATAC-seq ran fromBAM and from -d. DESeq2 ...
snakePipes 2.3.0 Deprecated mode Gruen in scRNAseq. scRNAseq mode Alevin now outputs spliced/unspli...
Updated citation for snakePipes Fixed replicate check for samples with trailing spaces in names Fixe...
Snakemake version is bumped to 5.13.0 Updated docs on running single snakefiles Added user-input tar...
snakePipes 2.2.3 Genrich will now run if sampleSheet without replicates is provided. Updated zenodo...
A wide number of bug fixes to scRNA-seq and other pipelines. In particular, many memory limits were ...
Bug fixes: multiQC in RNAseq allelic checks for successful sample identification in workflows where...
A couple of bugs were fixed including: Error messages from sample checks interfering with DAG creat...
snakePipes 2.3.1 Fixed aligner options for bwa in DNA-mapping. Fixed allelic mode for single end re...
snakePipes 2.5.4 Fixed a number of minor GitHub issues: #791, #816, #807, #789, #783, #768, #827. ...
RNAseq workflow is now called mRNA-seq added noncoding-RNA-seq workflow added STARsolo mode to scRNA...
snakePipes 2.4.0 Added support for multiple pairwise comparisons for DESeq2, sleuth, and rMats in t...
snakePipes 2.4.2 Deeptools coverage RPKM in mRNA-seq and noncoding-RNA-seq worflows now respects bl...
The initial production release, supporting RNA-seq, ChIP-seq, scRNA-seq (Cel-seq2), ATAC-seq and mor...
snakePipes 2.2.2 Fix DAG inconsistencies for ChIP-seq and ATAC-seq ran fromBAM and from -d. DESeq2 ...
snakePipes 2.2.2 Fix DAG inconsistencies for ChIP-seq and ATAC-seq ran fromBAM and from -d. DESeq2 ...
snakePipes 2.3.0 Deprecated mode Gruen in scRNAseq. scRNAseq mode Alevin now outputs spliced/unspli...
Updated citation for snakePipes Fixed replicate check for samples with trailing spaces in names Fixe...
Snakemake version is bumped to 5.13.0 Updated docs on running single snakefiles Added user-input tar...
snakePipes 2.2.3 Genrich will now run if sampleSheet without replicates is provided. Updated zenodo...
A wide number of bug fixes to scRNA-seq and other pipelines. In particular, many memory limits were ...
Bug fixes: multiQC in RNAseq allelic checks for successful sample identification in workflows where...
A couple of bugs were fixed including: Error messages from sample checks interfering with DAG creat...
snakePipes 2.3.1 Fixed aligner options for bwa in DNA-mapping. Fixed allelic mode for single end re...
snakePipes 2.5.4 Fixed a number of minor GitHub issues: #791, #816, #807, #789, #783, #768, #827. ...