Bug fixes: multiQC in RNAseq allelic checks for successful sample identification in workflows where this was missin
Fixed a bug in the ATAC-seq environment where GenomeInfoDbData was missing. Also an occasional issue...
snakePipes 2.3.0 Deprecated mode Gruen in scRNAseq. scRNAseq mode Alevin now outputs spliced/unspli...
A wide number of bug fixes to scRNA-seq and other pipelines. In particular, many memory limits were ...
Updated citation for snakePipes Fixed replicate check for samples with trailing spaces in names Fixe...
snakePipes 2.2.1 Fix a bug in DAG for ChIPseq allelic with CSAW. Fixed deepTools qc DAG for ChIPseq...
snakePipes 2.3.1 Fixed aligner options for bwa in DNA-mapping. Fixed allelic mode for single end re...
snakePipes 2.4.2 Deeptools coverage RPKM in mRNA-seq and noncoding-RNA-seq worflows now respects bl...
RNAseq workflow is now called mRNA-seq added noncoding-RNA-seq workflow added STARsolo mode to scRNA...
The initial production release, supporting RNA-seq, ChIP-seq, scRNA-seq (Cel-seq2), ATAC-seq and mor...
Documentation updates A few minor bug fixes, such as a multiQC input in the HiC pipelin
snakePipes 2.4.3 Fixed noncoding-RNA-seq workflow without sample sheet. Updated links to prebuilt i...
Fixed a typo in createIndices. Implemented complex experimental design in RNAseq (differential gene ...
Fixed a typo in createIndices. Implemented complex experimental design in RNAseq (differential gene ...
snakePipes 2.2.2 Fix DAG inconsistencies for ChIP-seq and ATAC-seq ran fromBAM and from -d. DESeq2 ...
snakePipes 2.2.0 Added Alevin mode in scRNA workflow Added a new conda environment using to call Al...
Fixed a bug in the ATAC-seq environment where GenomeInfoDbData was missing. Also an occasional issue...
snakePipes 2.3.0 Deprecated mode Gruen in scRNAseq. scRNAseq mode Alevin now outputs spliced/unspli...
A wide number of bug fixes to scRNA-seq and other pipelines. In particular, many memory limits were ...
Updated citation for snakePipes Fixed replicate check for samples with trailing spaces in names Fixe...
snakePipes 2.2.1 Fix a bug in DAG for ChIPseq allelic with CSAW. Fixed deepTools qc DAG for ChIPseq...
snakePipes 2.3.1 Fixed aligner options for bwa in DNA-mapping. Fixed allelic mode for single end re...
snakePipes 2.4.2 Deeptools coverage RPKM in mRNA-seq and noncoding-RNA-seq worflows now respects bl...
RNAseq workflow is now called mRNA-seq added noncoding-RNA-seq workflow added STARsolo mode to scRNA...
The initial production release, supporting RNA-seq, ChIP-seq, scRNA-seq (Cel-seq2), ATAC-seq and mor...
Documentation updates A few minor bug fixes, such as a multiQC input in the HiC pipelin
snakePipes 2.4.3 Fixed noncoding-RNA-seq workflow without sample sheet. Updated links to prebuilt i...
Fixed a typo in createIndices. Implemented complex experimental design in RNAseq (differential gene ...
Fixed a typo in createIndices. Implemented complex experimental design in RNAseq (differential gene ...
snakePipes 2.2.2 Fix DAG inconsistencies for ChIP-seq and ATAC-seq ran fromBAM and from -d. DESeq2 ...
snakePipes 2.2.0 Added Alevin mode in scRNA workflow Added a new conda environment using to call Al...
Fixed a bug in the ATAC-seq environment where GenomeInfoDbData was missing. Also an occasional issue...
snakePipes 2.3.0 Deprecated mode Gruen in scRNAseq. scRNAseq mode Alevin now outputs spliced/unspli...
A wide number of bug fixes to scRNA-seq and other pipelines. In particular, many memory limits were ...
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