maxplanck-ie/snakepipes: 1.0.0-alpha6
- Vivek Bhardwaj
- Steffen Heyne
- kilpert
- Andreas Richter
- Devon Ryan
Publication date
August 2018
DOIAbstract
Documentation updates A few minor bug fixes, such as a multiQC input in the HiC pipelin
Documentation updates A few minor bug fixes, such as a multiQC input in the HiC pipelin
snakePipes 2.2.1 Fix a bug in DAG for ChIPseq allelic with CSAW. Fixed deepTools qc DAG for ChIPseq...
This prerelease finally includes a createIndices workflow. That should drastically streamline index ...
A wide number of bug fixes to scRNA-seq and other pipelines. In particular, many memory limits were ...
A second alpha release. This has various bug fixes and now modifies snakemake so that temporary file...
This is the first alpha release going toward version 1.0. The workflows seem to all work, but we sti...
The initial production release, supporting RNA-seq, ChIP-seq, scRNA-seq (Cel-seq2), ATAC-seq and mor...
snakemake version >= 6.2.1 python version >= 3.7 added snakeMake in readme bug fix 777, 781 multiqc ...
Various bug fixes, adds the --notemp option to all pipelines. Most importantly, we no longer need to...
snakePipes 2.3.1 Fixed aligner options for bwa in DNA-mapping. Fixed allelic mode for single end re...
A couple of bugs were fixed including: Error messages from sample checks interfering with DAG creat...
Bug fixes: multiQC in RNAseq allelic checks for successful sample identification in workflows where...
Snakemake version is bumped to 5.13.0 Updated docs on running single snakefiles Added user-input tar...
snakePipes 2.2.2 Fix DAG inconsistencies for ChIP-seq and ATAC-seq ran fromBAM and from -d. DESeq2 ...
snakePipes 2.5.4 Fixed a number of minor GitHub issues: #791, #816, #807, #789, #783, #768, #827. ...
Fixed some conda environments so they could all be solved in a reasonable amount of time. Updated so...
snakePipes 2.2.1 Fix a bug in DAG for ChIPseq allelic with CSAW. Fixed deepTools qc DAG for ChIPseq...
This prerelease finally includes a createIndices workflow. That should drastically streamline index ...
A wide number of bug fixes to scRNA-seq and other pipelines. In particular, many memory limits were ...
A second alpha release. This has various bug fixes and now modifies snakemake so that temporary file...
This is the first alpha release going toward version 1.0. The workflows seem to all work, but we sti...
The initial production release, supporting RNA-seq, ChIP-seq, scRNA-seq (Cel-seq2), ATAC-seq and mor...
snakemake version >= 6.2.1 python version >= 3.7 added snakeMake in readme bug fix 777, 781 multiqc ...
Various bug fixes, adds the --notemp option to all pipelines. Most importantly, we no longer need to...
snakePipes 2.3.1 Fixed aligner options for bwa in DNA-mapping. Fixed allelic mode for single end re...
A couple of bugs were fixed including: Error messages from sample checks interfering with DAG creat...
Bug fixes: multiQC in RNAseq allelic checks for successful sample identification in workflows where...
Snakemake version is bumped to 5.13.0 Updated docs on running single snakefiles Added user-input tar...
snakePipes 2.2.2 Fix DAG inconsistencies for ChIP-seq and ATAC-seq ran fromBAM and from -d. DESeq2 ...
snakePipes 2.5.4 Fixed a number of minor GitHub issues: #791, #816, #807, #789, #783, #768, #827. ...
Fixed some conda environments so they could all be solved in a reasonable amount of time. Updated so...
snakePipes 2.2.1 Fix a bug in DAG for ChIPseq allelic with CSAW. Fixed deepTools qc DAG for ChIPseq...
This prerelease finally includes a createIndices workflow. That should drastically streamline index ...
A wide number of bug fixes to scRNA-seq and other pipelines. In particular, many memory limits were ...
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