snakePipes 2.2.2 Fix DAG inconsistencies for ChIP-seq and ATAC-seq ran fromBAM and from -d. DESeq2 Rmd file is not deleted anymore in noncoding-RNAseq. Python version is fixed at 3.7. Fixed labels in deepTools commands. Allele_info is now boolean
Fixed a typo in createIndices. Implemented complex experimental design in RNAseq (differential gene ...
A wide number of bug fixes to scRNA-seq and other pipelines. In particular, many memory limits were ...
Fixed a typo in createIndices. Implemented complex experimental design in RNAseq (differential gene ...
snakePipes 2.2.2 Fix DAG inconsistencies for ChIP-seq and ATAC-seq ran fromBAM and from -d. DESeq2 ...
snakePipes 2.2.1 Fix a bug in DAG for ChIPseq allelic with CSAW. Fixed deepTools qc DAG for ChIPseq...
snakePipes 2.4.0 Added support for multiple pairwise comparisons for DESeq2, sleuth, and rMats in t...
snakePipes 2.4.3 Fixed noncoding-RNA-seq workflow without sample sheet. Updated links to prebuilt i...
RNAseq workflow is now called mRNA-seq added noncoding-RNA-seq workflow added STARsolo mode to scRNA...
snakePipes 2.4.2 Deeptools coverage RPKM in mRNA-seq and noncoding-RNA-seq worflows now respects bl...
The initial production release, supporting RNA-seq, ChIP-seq, scRNA-seq (Cel-seq2), ATAC-seq and mor...
Snakemake version is bumped to 5.13.0 Updated docs on running single snakefiles Added user-input tar...
A couple of bugs were fixed including: Error messages from sample checks interfering with DAG creat...
snakemake version >= 6.2.1 python version >= 3.7 added snakeMake in readme bug fix 777, 781 multiqc ...
snakePipes 2.5.4 Fixed a number of minor GitHub issues: #791, #816, #807, #789, #783, #768, #827. ...
Updated Bowtie2 parameters for the cut and tag data Updated multibamSummary in ChIPSeq pipeline for ...
Fixed a typo in createIndices. Implemented complex experimental design in RNAseq (differential gene ...
A wide number of bug fixes to scRNA-seq and other pipelines. In particular, many memory limits were ...
Fixed a typo in createIndices. Implemented complex experimental design in RNAseq (differential gene ...
snakePipes 2.2.2 Fix DAG inconsistencies for ChIP-seq and ATAC-seq ran fromBAM and from -d. DESeq2 ...
snakePipes 2.2.1 Fix a bug in DAG for ChIPseq allelic with CSAW. Fixed deepTools qc DAG for ChIPseq...
snakePipes 2.4.0 Added support for multiple pairwise comparisons for DESeq2, sleuth, and rMats in t...
snakePipes 2.4.3 Fixed noncoding-RNA-seq workflow without sample sheet. Updated links to prebuilt i...
RNAseq workflow is now called mRNA-seq added noncoding-RNA-seq workflow added STARsolo mode to scRNA...
snakePipes 2.4.2 Deeptools coverage RPKM in mRNA-seq and noncoding-RNA-seq worflows now respects bl...
The initial production release, supporting RNA-seq, ChIP-seq, scRNA-seq (Cel-seq2), ATAC-seq and mor...
Snakemake version is bumped to 5.13.0 Updated docs on running single snakefiles Added user-input tar...
A couple of bugs were fixed including: Error messages from sample checks interfering with DAG creat...
snakemake version >= 6.2.1 python version >= 3.7 added snakeMake in readme bug fix 777, 781 multiqc ...
snakePipes 2.5.4 Fixed a number of minor GitHub issues: #791, #816, #807, #789, #783, #768, #827. ...
Updated Bowtie2 parameters for the cut and tag data Updated multibamSummary in ChIPSeq pipeline for ...
Fixed a typo in createIndices. Implemented complex experimental design in RNAseq (differential gene ...
A wide number of bug fixes to scRNA-seq and other pipelines. In particular, many memory limits were ...
Fixed a typo in createIndices. Implemented complex experimental design in RNAseq (differential gene ...
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