snakePipes 2.5.4 Fixed a number of minor GitHub issues: #791, #816, #807, #789, #783, #768, #827. Fixed misleading rule name for bamcoverage in atac-seq. Fixed conda env building on microsoft azure. Fixed CSAW report for ChIP-seq
snakePipes 2.4.0 Added support for multiple pairwise comparisons for DESeq2, sleuth, and rMats in t...
Updated citation for snakePipes Fixed replicate check for samples with trailing spaces in names Fixe...
Fixed a typo in createIndices. Implemented complex experimental design in RNAseq (differential gene ...
snakePipes 2.2.1 Fix a bug in DAG for ChIPseq allelic with CSAW. Fixed deepTools qc DAG for ChIPseq...
snakePipes 2.2.2 Fix DAG inconsistencies for ChIP-seq and ATAC-seq ran fromBAM and from -d. DESeq2 ...
snakePipes 2.2.2 Fix DAG inconsistencies for ChIP-seq and ATAC-seq ran fromBAM and from -d. DESeq2 ...
The initial production release, supporting RNA-seq, ChIP-seq, scRNA-seq (Cel-seq2), ATAC-seq and mor...
snakemake version >= 6.2.1 python version >= 3.7 added snakeMake in readme bug fix 777, 781 multiqc ...
Fixed a bug in the ATAC-seq environment where GenomeInfoDbData was missing. Also an occasional issue...
Fixed some conda environments so they could all be solved in a reasonable amount of time. Updated so...
Updated Bowtie2 parameters for the cut and tag data Updated multibamSummary in ChIPSeq pipeline for ...
Snakemake version is bumped to 5.13.0 Updated docs on running single snakefiles Added user-input tar...
RNAseq workflow is now called mRNA-seq added noncoding-RNA-seq workflow added STARsolo mode to scRNA...
snakePipes 2.4.3 Fixed noncoding-RNA-seq workflow without sample sheet. Updated links to prebuilt i...
Documentation updates A few minor bug fixes, such as a multiQC input in the HiC pipelin
snakePipes 2.4.0 Added support for multiple pairwise comparisons for DESeq2, sleuth, and rMats in t...
Updated citation for snakePipes Fixed replicate check for samples with trailing spaces in names Fixe...
Fixed a typo in createIndices. Implemented complex experimental design in RNAseq (differential gene ...
snakePipes 2.2.1 Fix a bug in DAG for ChIPseq allelic with CSAW. Fixed deepTools qc DAG for ChIPseq...
snakePipes 2.2.2 Fix DAG inconsistencies for ChIP-seq and ATAC-seq ran fromBAM and from -d. DESeq2 ...
snakePipes 2.2.2 Fix DAG inconsistencies for ChIP-seq and ATAC-seq ran fromBAM and from -d. DESeq2 ...
The initial production release, supporting RNA-seq, ChIP-seq, scRNA-seq (Cel-seq2), ATAC-seq and mor...
snakemake version >= 6.2.1 python version >= 3.7 added snakeMake in readme bug fix 777, 781 multiqc ...
Fixed a bug in the ATAC-seq environment where GenomeInfoDbData was missing. Also an occasional issue...
Fixed some conda environments so they could all be solved in a reasonable amount of time. Updated so...
Updated Bowtie2 parameters for the cut and tag data Updated multibamSummary in ChIPSeq pipeline for ...
Snakemake version is bumped to 5.13.0 Updated docs on running single snakefiles Added user-input tar...
RNAseq workflow is now called mRNA-seq added noncoding-RNA-seq workflow added STARsolo mode to scRNA...
snakePipes 2.4.3 Fixed noncoding-RNA-seq workflow without sample sheet. Updated links to prebuilt i...
Documentation updates A few minor bug fixes, such as a multiQC input in the HiC pipelin
snakePipes 2.4.0 Added support for multiple pairwise comparisons for DESeq2, sleuth, and rMats in t...
Updated citation for snakePipes Fixed replicate check for samples with trailing spaces in names Fixe...
Fixed a typo in createIndices. Implemented complex experimental design in RNAseq (differential gene ...