Updated Bowtie2 parameters for the cut and tag data Updated multibamSummary in ChIPSeq pipeline for data with spike-in Uncommented the BamCompare for ChIPseq pipeline with spike-in set a max thread for each rule External PR #764: always check for >0 when generating heatmap for the differential analysis done by deseq
A wide number of bug fixes to scRNA-seq and other pipelines. In particular, many memory limits were ...
Updated citation for snakePipes Fixed replicate check for samples with trailing spaces in names Fixe...
Added tbb = 2020.2 to dna_mapping, creatIndices and rnae_seq yaml file Added cut and tag parameters ...
Snakemake version is bumped to 5.13.0 Updated docs on running single snakefiles Added user-input tar...
snakePipes 2.2.2 Fix DAG inconsistencies for ChIP-seq and ATAC-seq ran fromBAM and from -d. DESeq2 ...
snakePipes 2.2.2 Fix DAG inconsistencies for ChIP-seq and ATAC-seq ran fromBAM and from -d. DESeq2 ...
snakePipes 2.2.1 Fix a bug in DAG for ChIPseq allelic with CSAW. Fixed deepTools qc DAG for ChIPseq...
snakePipes 2.4.2 Deeptools coverage RPKM in mRNA-seq and noncoding-RNA-seq worflows now respects bl...
snakePipes 2.4.0 Added support for multiple pairwise comparisons for DESeq2, sleuth, and rMats in t...
snakePipes 2.5.4 Fixed a number of minor GitHub issues: #791, #816, #807, #789, #783, #768, #827. ...
snakemake version >= 6.2.1 python version >= 3.7 added snakeMake in readme bug fix 777, 781 multiqc ...
The initial production release, supporting RNA-seq, ChIP-seq, scRNA-seq (Cel-seq2), ATAC-seq and mor...
snakePipes 2.4.3 Fixed noncoding-RNA-seq workflow without sample sheet. Updated links to prebuilt i...
Documentation updates A few minor bug fixes, such as a multiQC input in the HiC pipelin
A couple of bugs were fixed including: Error messages from sample checks interfering with DAG creat...
A wide number of bug fixes to scRNA-seq and other pipelines. In particular, many memory limits were ...
Updated citation for snakePipes Fixed replicate check for samples with trailing spaces in names Fixe...
Added tbb = 2020.2 to dna_mapping, creatIndices and rnae_seq yaml file Added cut and tag parameters ...
Snakemake version is bumped to 5.13.0 Updated docs on running single snakefiles Added user-input tar...
snakePipes 2.2.2 Fix DAG inconsistencies for ChIP-seq and ATAC-seq ran fromBAM and from -d. DESeq2 ...
snakePipes 2.2.2 Fix DAG inconsistencies for ChIP-seq and ATAC-seq ran fromBAM and from -d. DESeq2 ...
snakePipes 2.2.1 Fix a bug in DAG for ChIPseq allelic with CSAW. Fixed deepTools qc DAG for ChIPseq...
snakePipes 2.4.2 Deeptools coverage RPKM in mRNA-seq and noncoding-RNA-seq worflows now respects bl...
snakePipes 2.4.0 Added support for multiple pairwise comparisons for DESeq2, sleuth, and rMats in t...
snakePipes 2.5.4 Fixed a number of minor GitHub issues: #791, #816, #807, #789, #783, #768, #827. ...
snakemake version >= 6.2.1 python version >= 3.7 added snakeMake in readme bug fix 777, 781 multiqc ...
The initial production release, supporting RNA-seq, ChIP-seq, scRNA-seq (Cel-seq2), ATAC-seq and mor...
snakePipes 2.4.3 Fixed noncoding-RNA-seq workflow without sample sheet. Updated links to prebuilt i...
Documentation updates A few minor bug fixes, such as a multiQC input in the HiC pipelin
A couple of bugs were fixed including: Error messages from sample checks interfering with DAG creat...
A wide number of bug fixes to scRNA-seq and other pipelines. In particular, many memory limits were ...
Updated citation for snakePipes Fixed replicate check for samples with trailing spaces in names Fixe...
Added tbb = 2020.2 to dna_mapping, creatIndices and rnae_seq yaml file Added cut and tag parameters ...