A number of minor bug fixes across all of the pipelines Updates of all tool versions and switching to R 3.5.1 A snakePipes flushOrganisms option was added to remove the default organism YAML files. Renamed --notemp to --keepTemp, which should be less confusin
Updated citation for snakePipes Fixed replicate check for samples with trailing spaces in names Fixe...
snakePipes 2.4.0 Added support for multiple pairwise comparisons for DESeq2, sleuth, and rMats in t...
A wide number of bug fixes to scRNA-seq and other pipelines. In particular, many memory limits were ...
Various bug fixes, adds the --notemp option to all pipelines. Most importantly, we no longer need to...
A second alpha release. This has various bug fixes and now modifies snakemake so that temporary file...
Snakemake version is bumped to 5.13.0 Updated docs on running single snakefiles Added user-input tar...
snakePipes 2.2.2 Fix DAG inconsistencies for ChIP-seq and ATAC-seq ran fromBAM and from -d. DESeq2 ...
Documentation updates A few minor bug fixes, such as a multiQC input in the HiC pipelin
snakePipes 2.2.2 Fix DAG inconsistencies for ChIP-seq and ATAC-seq ran fromBAM and from -d. DESeq2 ...
A couple of bugs were fixed including: Error messages from sample checks interfering with DAG creat...
Fixed some conda environments so they could all be solved in a reasonable amount of time. Updated so...
The initial production release, supporting RNA-seq, ChIP-seq, scRNA-seq (Cel-seq2), ATAC-seq and mor...
snakemake version >= 6.2.1 python version >= 3.7 added snakeMake in readme bug fix 777, 781 multiqc ...
snakePipes 2.4.3 Fixed noncoding-RNA-seq workflow without sample sheet. Updated links to prebuilt i...
snakePipes 2.4.2 Deeptools coverage RPKM in mRNA-seq and noncoding-RNA-seq worflows now respects bl...
Updated citation for snakePipes Fixed replicate check for samples with trailing spaces in names Fixe...
snakePipes 2.4.0 Added support for multiple pairwise comparisons for DESeq2, sleuth, and rMats in t...
A wide number of bug fixes to scRNA-seq and other pipelines. In particular, many memory limits were ...
Various bug fixes, adds the --notemp option to all pipelines. Most importantly, we no longer need to...
A second alpha release. This has various bug fixes and now modifies snakemake so that temporary file...
Snakemake version is bumped to 5.13.0 Updated docs on running single snakefiles Added user-input tar...
snakePipes 2.2.2 Fix DAG inconsistencies for ChIP-seq and ATAC-seq ran fromBAM and from -d. DESeq2 ...
Documentation updates A few minor bug fixes, such as a multiQC input in the HiC pipelin
snakePipes 2.2.2 Fix DAG inconsistencies for ChIP-seq and ATAC-seq ran fromBAM and from -d. DESeq2 ...
A couple of bugs were fixed including: Error messages from sample checks interfering with DAG creat...
Fixed some conda environments so they could all be solved in a reasonable amount of time. Updated so...
The initial production release, supporting RNA-seq, ChIP-seq, scRNA-seq (Cel-seq2), ATAC-seq and mor...
snakemake version >= 6.2.1 python version >= 3.7 added snakeMake in readme bug fix 777, 781 multiqc ...
snakePipes 2.4.3 Fixed noncoding-RNA-seq workflow without sample sheet. Updated links to prebuilt i...
snakePipes 2.4.2 Deeptools coverage RPKM in mRNA-seq and noncoding-RNA-seq worflows now respects bl...
Updated citation for snakePipes Fixed replicate check for samples with trailing spaces in names Fixe...
snakePipes 2.4.0 Added support for multiple pairwise comparisons for DESeq2, sleuth, and rMats in t...
A wide number of bug fixes to scRNA-seq and other pipelines. In particular, many memory limits were ...
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