Figure S8. SUPER-FOCUS level 2 subsystems which were significantly altered at different sequencing depths. (PNG 153Â kb
Similarities in the OTUs that are classified as different genera within the same family. (DOCX 20 kb
Correlation between score of PC2 of the metabolome and that of the microbiome. (DOCX 278 kb
Heat maps based on the correlation between the relative abundance of the microbiome at different tax...
Table S4. Statistical differences in alpha diversity at different sequencing depths. (XLSX 10Â kb
Figure S6. Dissimilarity plot based on the relative abundances of the 865 level-4 enzyme commission ...
Figure S2. False positives detected using each species classifier with the total number of reads fro...
Table S5. Statistical differences in the relative abundances of enzyme commission (EC) level-4 categ...
Figure S3. Species detected ≥ 2.5% relative abundance in kefir samples using each species classifier...
Figure S4. (A) The consensus taxonomic profile of kefir samples, as predicted by averaging the resul...
Example of similarity calculation (results of calculation in the yellow area of Additional file 12)....
Relative abundance of intestinal microbiome (species level classification of OTUs). (XLSX 2182 kb
Background The use of shotgun metagenomics to analyse low-complexity microbial commu...
Results of similarity calculation for OTU-based family and genus-level classification. (DOCX 15.1 kb
Comparison of relative peak area of metabolite picked up by the PCLâ>â0.7. (DOCX 229 kb
Figure S6. Taxonomic composition of bacterial mock community samples pre-filtering (a) and post-filt...
Similarities in the OTUs that are classified as different genera within the same family. (DOCX 20 kb
Correlation between score of PC2 of the metabolome and that of the microbiome. (DOCX 278 kb
Heat maps based on the correlation between the relative abundance of the microbiome at different tax...
Table S4. Statistical differences in alpha diversity at different sequencing depths. (XLSX 10Â kb
Figure S6. Dissimilarity plot based on the relative abundances of the 865 level-4 enzyme commission ...
Figure S2. False positives detected using each species classifier with the total number of reads fro...
Table S5. Statistical differences in the relative abundances of enzyme commission (EC) level-4 categ...
Figure S3. Species detected ≥ 2.5% relative abundance in kefir samples using each species classifier...
Figure S4. (A) The consensus taxonomic profile of kefir samples, as predicted by averaging the resul...
Example of similarity calculation (results of calculation in the yellow area of Additional file 12)....
Relative abundance of intestinal microbiome (species level classification of OTUs). (XLSX 2182 kb
Background The use of shotgun metagenomics to analyse low-complexity microbial commu...
Results of similarity calculation for OTU-based family and genus-level classification. (DOCX 15.1 kb
Comparison of relative peak area of metabolite picked up by the PCLâ>â0.7. (DOCX 229 kb
Figure S6. Taxonomic composition of bacterial mock community samples pre-filtering (a) and post-filt...
Similarities in the OTUs that are classified as different genera within the same family. (DOCX 20 kb
Correlation between score of PC2 of the metabolome and that of the microbiome. (DOCX 278 kb
Heat maps based on the correlation between the relative abundance of the microbiome at different tax...
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