Figure S6. Taxonomic composition of bacterial mock community samples pre-filtering (a) and post-filtering (b). Compositions are sorted by dilution constant and shown at the family level. Shading along bottom indicates less (darker) and more (lighter) dilution. Only taxa with an average abundance of at least 1% are shown. (PDF 253 kb
Table S3. Composition of mock bacterial communities based on culturable endophytic isolates from cac...
a Tree inferred by CSI Phylogeny pruning set to 10, contigs from day 1 used as reference. PDF. b Tre...
Figure S3. Association between bacterial lifestyle and effective population size, as computed from s...
Table S2. Coefficient of variation (CV) values for individual bacteria taxa in the bacterial mock co...
Figure S4. Levey-Jennings plots for bacterial genera over the course of 16 sequencing runs (x-axis, ...
Figure S5. Boxplots of Jensen-Shannon (a) and Jaccard (b) distances for bacterial mock and stool sam...
Figure S3. Heatmaps of coefficient of variation (CV) values for each taxon across sequencing runs, a...
Figure S1. Schematic representation of the hybridization capture method. Figure S2. Mock community p...
Correlation coefficients of genus composition of the Singer et al. mock community between theoretica...
Table S3. Predictive models of the expected variation in microbiome measurements for given input bio...
Figure S1. Effect of primary filters on the number of reads. Figure S2. Insert size distribution. Fi...
Taxonomic composition of samples. The relative abundance of each group in subgingival and supragingi...
Additional file 3:Table S3. Explicit dataset used in Fig. ure 2. Original 16S rRNA gene amplicon seq...
List of the strains for which the inferred 16S rRNA gene copy number differed by more than threefold...
Figure S8. Correlation between genome size and Ne for each lifestyle category. Genome size for a giv...
Table S3. Composition of mock bacterial communities based on culturable endophytic isolates from cac...
a Tree inferred by CSI Phylogeny pruning set to 10, contigs from day 1 used as reference. PDF. b Tre...
Figure S3. Association between bacterial lifestyle and effective population size, as computed from s...
Table S2. Coefficient of variation (CV) values for individual bacteria taxa in the bacterial mock co...
Figure S4. Levey-Jennings plots for bacterial genera over the course of 16 sequencing runs (x-axis, ...
Figure S5. Boxplots of Jensen-Shannon (a) and Jaccard (b) distances for bacterial mock and stool sam...
Figure S3. Heatmaps of coefficient of variation (CV) values for each taxon across sequencing runs, a...
Figure S1. Schematic representation of the hybridization capture method. Figure S2. Mock community p...
Correlation coefficients of genus composition of the Singer et al. mock community between theoretica...
Table S3. Predictive models of the expected variation in microbiome measurements for given input bio...
Figure S1. Effect of primary filters on the number of reads. Figure S2. Insert size distribution. Fi...
Taxonomic composition of samples. The relative abundance of each group in subgingival and supragingi...
Additional file 3:Table S3. Explicit dataset used in Fig. ure 2. Original 16S rRNA gene amplicon seq...
List of the strains for which the inferred 16S rRNA gene copy number differed by more than threefold...
Figure S8. Correlation between genome size and Ne for each lifestyle category. Genome size for a giv...
Table S3. Composition of mock bacterial communities based on culturable endophytic isolates from cac...
a Tree inferred by CSI Phylogeny pruning set to 10, contigs from day 1 used as reference. PDF. b Tre...
Figure S3. Association between bacterial lifestyle and effective population size, as computed from s...