Table S5. Statistical differences in the relative abundances of enzyme commission (EC) level-4 categories between HUMAnN2 and SUPER-FOCUS. (CSV 16Â kb
The predictions on all samples: (a) SVM vs random forests, (b) SVM vs SourceTracker. The values on x...
Example of similarity calculation (results of calculation in the yellow area of Additional file 12)....
Principal component loading of each genus and family for microbiome first principal component (PC1)....
Figure S6. Dissimilarity plot based on the relative abundances of the 865 level-4 enzyme commission ...
Table S4. Statistical differences in alpha diversity at different sequencing depths. (XLSX 10Â kb
Figure S8. SUPER-FOCUS level 2 subsystems which were significantly altered at different sequencing d...
Figure S3. Species detected ≥ 2.5% relative abundance in kefir samples using each species classifier...
Figure S2. False positives detected using each species classifier with the total number of reads fro...
Figure S4. (A) The consensus taxonomic profile of kefir samples, as predicted by averaging the resul...
Results of similarity calculation for OTU-based family and genus-level classification. (DOCX 15.1 kb
Relative abundance of intestinal microbiome (species level classification of OTUs). (XLSX 2182 kb
Comparison of relative peak area of metabolite picked up by the PCL < − 0.7. (DOCX 119 kb
Comparison of relative peak area of metabolite picked up by the PCLâ>â0.7. (DOCX 229 kb
Heat maps based on the correlation between the relative abundance of the microbiome at different tax...
Table S1. PERMANOVA analysis used to assess microbial community structure differences. Table S2. Med...
The predictions on all samples: (a) SVM vs random forests, (b) SVM vs SourceTracker. The values on x...
Example of similarity calculation (results of calculation in the yellow area of Additional file 12)....
Principal component loading of each genus and family for microbiome first principal component (PC1)....
Figure S6. Dissimilarity plot based on the relative abundances of the 865 level-4 enzyme commission ...
Table S4. Statistical differences in alpha diversity at different sequencing depths. (XLSX 10Â kb
Figure S8. SUPER-FOCUS level 2 subsystems which were significantly altered at different sequencing d...
Figure S3. Species detected ≥ 2.5% relative abundance in kefir samples using each species classifier...
Figure S2. False positives detected using each species classifier with the total number of reads fro...
Figure S4. (A) The consensus taxonomic profile of kefir samples, as predicted by averaging the resul...
Results of similarity calculation for OTU-based family and genus-level classification. (DOCX 15.1 kb
Relative abundance of intestinal microbiome (species level classification of OTUs). (XLSX 2182 kb
Comparison of relative peak area of metabolite picked up by the PCL < − 0.7. (DOCX 119 kb
Comparison of relative peak area of metabolite picked up by the PCLâ>â0.7. (DOCX 229 kb
Heat maps based on the correlation between the relative abundance of the microbiome at different tax...
Table S1. PERMANOVA analysis used to assess microbial community structure differences. Table S2. Med...
The predictions on all samples: (a) SVM vs random forests, (b) SVM vs SourceTracker. The values on x...
Example of similarity calculation (results of calculation in the yellow area of Additional file 12)....
Principal component loading of each genus and family for microbiome first principal component (PC1)....
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