Table S4. Statistical differences in alpha diversity at different sequencing depths. (XLSX 10Â kb
Example of similarity calculation (results of calculation in the yellow area of Additional file 12)....
Table S3. Predictive models of the expected variation in microbiome measurements for given input bio...
Procedure for obtaining associations between taxa and environments. Only the genera significantly re...
Figure S3. Species detected ≥ 2.5% relative abundance in kefir samples using each species classifier...
Figure S8. SUPER-FOCUS level 2 subsystems which were significantly altered at different sequencing d...
Table S5. Statistical differences in the relative abundances of enzyme commission (EC) level-4 categ...
Figure S6. Dissimilarity plot based on the relative abundances of the 865 level-4 enzyme commission ...
Figure S4. (A) The consensus taxonomic profile of kefir samples, as predicted by averaging the resul...
Figure S2. False positives detected using each species classifier with the total number of reads fro...
Similarities in the OTUs that are classified as different families within the same order. (DOCX 20 k...
Relative abundance of intestinal microbiome (species level classification of OTUs). (XLSX 2182 kb
Classification accuracy of RF and SourceTracker using different sets of input features. On the left ...
Background The use of shotgun metagenomics to analyse low-complexity microbial commu...
Results of similarity calculation for OTU-based family and genus-level classification. (DOCX 15.1 kb
The predictions on all samples: (a) SVM vs random forests, (b) SVM vs SourceTracker. The values on x...
Example of similarity calculation (results of calculation in the yellow area of Additional file 12)....
Table S3. Predictive models of the expected variation in microbiome measurements for given input bio...
Procedure for obtaining associations between taxa and environments. Only the genera significantly re...
Figure S3. Species detected ≥ 2.5% relative abundance in kefir samples using each species classifier...
Figure S8. SUPER-FOCUS level 2 subsystems which were significantly altered at different sequencing d...
Table S5. Statistical differences in the relative abundances of enzyme commission (EC) level-4 categ...
Figure S6. Dissimilarity plot based on the relative abundances of the 865 level-4 enzyme commission ...
Figure S4. (A) The consensus taxonomic profile of kefir samples, as predicted by averaging the resul...
Figure S2. False positives detected using each species classifier with the total number of reads fro...
Similarities in the OTUs that are classified as different families within the same order. (DOCX 20 k...
Relative abundance of intestinal microbiome (species level classification of OTUs). (XLSX 2182 kb
Classification accuracy of RF and SourceTracker using different sets of input features. On the left ...
Background The use of shotgun metagenomics to analyse low-complexity microbial commu...
Results of similarity calculation for OTU-based family and genus-level classification. (DOCX 15.1 kb
The predictions on all samples: (a) SVM vs random forests, (b) SVM vs SourceTracker. The values on x...
Example of similarity calculation (results of calculation in the yellow area of Additional file 12)....
Table S3. Predictive models of the expected variation in microbiome measurements for given input bio...
Procedure for obtaining associations between taxa and environments. Only the genera significantly re...
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