Figure S2. False positives detected using each species classifier with the total number of reads from each sequencer. (PNG 128Â kb
Relative abundance of intestinal microbiome (species level classification of OTUs). (XLSX 2182 kb
Example of similarity calculation (results of calculation in the yellow area of Additional file 12)....
Tool accuracy per taxon. Each file is categorized by taxonomic level. Inside each file, the first sh...
Figure S3. Species detected ≥ 2.5% relative abundance in kefir samples using each species classifier...
Figure S8. SUPER-FOCUS level 2 subsystems which were significantly altered at different sequencing d...
Figure S6. Dissimilarity plot based on the relative abundances of the 865 level-4 enzyme commission ...
Table S4. Statistical differences in alpha diversity at different sequencing depths. (XLSX 10Â kb
Figure S4. (A) The consensus taxonomic profile of kefir samples, as predicted by averaging the resul...
Table S5. Statistical differences in the relative abundances of enzyme commission (EC) level-4 categ...
The impact of k-mer size 8 and 12, as well as the impact of bootstrap values 10 and 100 on species l...
Additional file 1: Table S1. Classification rate of reads for six reference databases at various tax...
Table S1. PERMANOVA analysis used to assess microbial community structure differences. Table S2. Med...
False negative and false positive species counts in the ancient and modern Oral Microbiome datasets....
Background The use of shotgun metagenomics to analyse low-complexity microbial commu...
Mean count of false positive (red), false negative (orange), and true detected species (blue) in the...
Relative abundance of intestinal microbiome (species level classification of OTUs). (XLSX 2182 kb
Example of similarity calculation (results of calculation in the yellow area of Additional file 12)....
Tool accuracy per taxon. Each file is categorized by taxonomic level. Inside each file, the first sh...
Figure S3. Species detected ≥ 2.5% relative abundance in kefir samples using each species classifier...
Figure S8. SUPER-FOCUS level 2 subsystems which were significantly altered at different sequencing d...
Figure S6. Dissimilarity plot based on the relative abundances of the 865 level-4 enzyme commission ...
Table S4. Statistical differences in alpha diversity at different sequencing depths. (XLSX 10Â kb
Figure S4. (A) The consensus taxonomic profile of kefir samples, as predicted by averaging the resul...
Table S5. Statistical differences in the relative abundances of enzyme commission (EC) level-4 categ...
The impact of k-mer size 8 and 12, as well as the impact of bootstrap values 10 and 100 on species l...
Additional file 1: Table S1. Classification rate of reads for six reference databases at various tax...
Table S1. PERMANOVA analysis used to assess microbial community structure differences. Table S2. Med...
False negative and false positive species counts in the ancient and modern Oral Microbiome datasets....
Background The use of shotgun metagenomics to analyse low-complexity microbial commu...
Mean count of false positive (red), false negative (orange), and true detected species (blue) in the...
Relative abundance of intestinal microbiome (species level classification of OTUs). (XLSX 2182 kb
Example of similarity calculation (results of calculation in the yellow area of Additional file 12)....
Tool accuracy per taxon. Each file is categorized by taxonomic level. Inside each file, the first sh...
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