Figure S6. Dissimilarity plot based on the relative abundances of the 865 level-4 enzyme commission (EC) categories which were detected by both HUMAnN2 and SUPER-FOCUS. (PNG 47Â kb
Supplementary tables. Supplementary Table S1. Bacterial abundances in Simulation 1 (high-diversity c...
Results of similarity calculation for OTU-based family and genus-level classification. (DOCX 15.1 kb
Table S7. Summary of selected protein families (Pfam) based on rpstblastx algorithm. (PDF 410 kb
Table S5. Statistical differences in the relative abundances of enzyme commission (EC) level-4 categ...
Figure S3. Species detected ≥ 2.5% relative abundance in kefir samples using each species classifier...
Figure S4. (A) The consensus taxonomic profile of kefir samples, as predicted by averaging the resul...
Figure S8. SUPER-FOCUS level 2 subsystems which were significantly altered at different sequencing d...
Table S4. Statistical differences in alpha diversity at different sequencing depths. (XLSX 10Â kb
Figure S2. False positives detected using each species classifier with the total number of reads fro...
Table S1. PERMANOVA analysis used to assess microbial community structure differences. Table S2. Med...
Comparison of relative peak area of metabolite picked up by the PCL < − 0.7. (DOCX 119 kb
Comparison of relative peak area of metabolite picked up by the PCLâ>â0.7. (DOCX 229 kb
Relative abundance of intestinal microbiome (species level classification of OTUs). (XLSX 2182 kb
Heat maps based on the correlation between the relative abundance of the microbiome at different tax...
Comparison of the effect of OTU picking method on the proportion of OTUs cultured. Figure S2 Compari...
Supplementary tables. Supplementary Table S1. Bacterial abundances in Simulation 1 (high-diversity c...
Results of similarity calculation for OTU-based family and genus-level classification. (DOCX 15.1 kb
Table S7. Summary of selected protein families (Pfam) based on rpstblastx algorithm. (PDF 410 kb
Table S5. Statistical differences in the relative abundances of enzyme commission (EC) level-4 categ...
Figure S3. Species detected ≥ 2.5% relative abundance in kefir samples using each species classifier...
Figure S4. (A) The consensus taxonomic profile of kefir samples, as predicted by averaging the resul...
Figure S8. SUPER-FOCUS level 2 subsystems which were significantly altered at different sequencing d...
Table S4. Statistical differences in alpha diversity at different sequencing depths. (XLSX 10Â kb
Figure S2. False positives detected using each species classifier with the total number of reads fro...
Table S1. PERMANOVA analysis used to assess microbial community structure differences. Table S2. Med...
Comparison of relative peak area of metabolite picked up by the PCL < − 0.7. (DOCX 119 kb
Comparison of relative peak area of metabolite picked up by the PCLâ>â0.7. (DOCX 229 kb
Relative abundance of intestinal microbiome (species level classification of OTUs). (XLSX 2182 kb
Heat maps based on the correlation between the relative abundance of the microbiome at different tax...
Comparison of the effect of OTU picking method on the proportion of OTUs cultured. Figure S2 Compari...
Supplementary tables. Supplementary Table S1. Bacterial abundances in Simulation 1 (high-diversity c...
Results of similarity calculation for OTU-based family and genus-level classification. (DOCX 15.1 kb
Table S7. Summary of selected protein families (Pfam) based on rpstblastx algorithm. (PDF 410 kb
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