Additional file 1: Table S1. Differences in TE subfamily cis-regulatory activities estimated by craTEs across experiments presented in Fig. 1C
Mutant alleles and quality statistics of the MethylC-seq data produced in this study. Reads from our...
Figure S1. a–c The distribution of Tajima’s D for DNase footprint SNPs in each subpopulation. d Over...
It contains two folders “TE_PIPELINE_SUMMARY_STATISTICS_ACTIVE” “TE_PIPELINE_SUMMARY_STATISTICS_REPR...
Additional file 1 from "Statistical learning quantifies transposable element-mediated cis-regulation...
The completed BASE 2.0 results of each motif, defining the TF binding affinities as motif frequencie...
Gene functional enrichment analysis with Wilcoxon rank test of KEGG and GO pathways. (XLSX 283 kb
Table S2. p-values and corrected p-values from TE-Analysis pipeline for active regions (permutation ...
Table S3. p-values and corrected p-values from TE-Analysis pipeline for repressed regions (permutati...
Table S7. Analysis of correlation between TE insertion and gene expression variance. Normalized GTEx...
Related to "Statistical learning quantifies transposable element-mediated cis-regulation", Pulver et...
Additional file 4. Summary statistics of Summary-based Mendelian Randomisation with gene expression ...
TF diversification scores and random forest prediction accuracies. (CSV 609 bytes
Table S5. Analysis of tissue specific enrichment in active regions. For each TE enriched in active r...
This file contains supplemental Tables S1-S7, and supplemental Figures S1-S30. (PDF 27600 kb
Additional file 7: Figure 3. Proportion difference between random SNPs and SNPs in meQTLs in the Nor...
Mutant alleles and quality statistics of the MethylC-seq data produced in this study. Reads from our...
Figure S1. a–c The distribution of Tajima’s D for DNase footprint SNPs in each subpopulation. d Over...
It contains two folders “TE_PIPELINE_SUMMARY_STATISTICS_ACTIVE” “TE_PIPELINE_SUMMARY_STATISTICS_REPR...
Additional file 1 from "Statistical learning quantifies transposable element-mediated cis-regulation...
The completed BASE 2.0 results of each motif, defining the TF binding affinities as motif frequencie...
Gene functional enrichment analysis with Wilcoxon rank test of KEGG and GO pathways. (XLSX 283 kb
Table S2. p-values and corrected p-values from TE-Analysis pipeline for active regions (permutation ...
Table S3. p-values and corrected p-values from TE-Analysis pipeline for repressed regions (permutati...
Table S7. Analysis of correlation between TE insertion and gene expression variance. Normalized GTEx...
Related to "Statistical learning quantifies transposable element-mediated cis-regulation", Pulver et...
Additional file 4. Summary statistics of Summary-based Mendelian Randomisation with gene expression ...
TF diversification scores and random forest prediction accuracies. (CSV 609 bytes
Table S5. Analysis of tissue specific enrichment in active regions. For each TE enriched in active r...
This file contains supplemental Tables S1-S7, and supplemental Figures S1-S30. (PDF 27600 kb
Additional file 7: Figure 3. Proportion difference between random SNPs and SNPs in meQTLs in the Nor...
Mutant alleles and quality statistics of the MethylC-seq data produced in this study. Reads from our...
Figure S1. a–c The distribution of Tajima’s D for DNase footprint SNPs in each subpopulation. d Over...
It contains two folders “TE_PIPELINE_SUMMARY_STATISTICS_ACTIVE” “TE_PIPELINE_SUMMARY_STATISTICS_REPR...