Additional file 7: Figure 3. Proportion difference between random SNPs and SNPs in meQTLs in the Normal group for the different chromatin states. (*) indicates a significant enrichment or underrepresentation. X axis is: 1_TssA - Active transcription start site; 2_PromU - Promoter upstream transcription start site; 3_PromD1 - Promoter downstream transcription start site 1; 4_PromD2 - Promoter downstream transcription start site 2; 22_PromP - Poised promoter; 23_PromBiv - Bivalent promoter; 10_TxEnh5 - Transcribed 5′preferential and enhancer; 11_TxEnh3 - Transcribed 3′preferential and enhancer; 12_TxEnhW - Transcribed and weak enhancer; 13_EnhA1 - Active enhancer 1; 14_EnhA2 - Active enhancer 2; 15_EnhAF - Active enhancer flank; 16_EnhW1 - We...
Additional file 4. Summary statistics of Summary-based Mendelian Randomisation with gene expression ...
Gene expression of the selected marker set in normal (n = 49), adenoma (n = 49), and tumour (n = 49)...
Hierarchical clustering of average CGI + SS patterns for colon tissues. (PDF 135 kb
Additional file 10: Figure 4: A) Proportion of CpGs, B) unique CpGs, C) SNPs and D) unique SNPs in m...
Additional file 12: Figure 5: Distribution of the correlation between CpGs and genes (eQTMs) in meQT...
Additional file 3: Table 1. For each chromosome, the number of elements (genes, CpGs and SNPs) analy...
Additional file 11: Table 4. haploReg results by model. Fisher exact test comparing, for chromatin s...
Additional file 4: Figure 2. CpG distribution by CpG island context. Proportion of CpGs by CpG islan...
Additional file 14: Figure 6. A) Mixture of normal distributions and clusters of CpGs according to t...
Additional file 1: Figure 1. Number of samples in each data type and each quantitative trait analysi...
Additional file 8: Table 2. meQTLs functional analysis obtained with enrichR R package. Enrichment a...
Box plot representation of DNA methylation alterations of analysed genes in biopsies and macrodissec...
Dataset 2: Colon Tumor vs. Normal Colon from TCGA (COAD) â processed methylation and overlap with ...
Gene expression patterns for each CGI + SS clusters in colon tissues. (PDF 5.18 kb
Figure S3. Difference in specific cytosine methylation between S2:208 RED and S2:208 ORN LwV tissues...
Additional file 4. Summary statistics of Summary-based Mendelian Randomisation with gene expression ...
Gene expression of the selected marker set in normal (n = 49), adenoma (n = 49), and tumour (n = 49)...
Hierarchical clustering of average CGI + SS patterns for colon tissues. (PDF 135 kb
Additional file 10: Figure 4: A) Proportion of CpGs, B) unique CpGs, C) SNPs and D) unique SNPs in m...
Additional file 12: Figure 5: Distribution of the correlation between CpGs and genes (eQTMs) in meQT...
Additional file 3: Table 1. For each chromosome, the number of elements (genes, CpGs and SNPs) analy...
Additional file 11: Table 4. haploReg results by model. Fisher exact test comparing, for chromatin s...
Additional file 4: Figure 2. CpG distribution by CpG island context. Proportion of CpGs by CpG islan...
Additional file 14: Figure 6. A) Mixture of normal distributions and clusters of CpGs according to t...
Additional file 1: Figure 1. Number of samples in each data type and each quantitative trait analysi...
Additional file 8: Table 2. meQTLs functional analysis obtained with enrichR R package. Enrichment a...
Box plot representation of DNA methylation alterations of analysed genes in biopsies and macrodissec...
Dataset 2: Colon Tumor vs. Normal Colon from TCGA (COAD) â processed methylation and overlap with ...
Gene expression patterns for each CGI + SS clusters in colon tissues. (PDF 5.18 kb
Figure S3. Difference in specific cytosine methylation between S2:208 RED and S2:208 ORN LwV tissues...
Additional file 4. Summary statistics of Summary-based Mendelian Randomisation with gene expression ...
Gene expression of the selected marker set in normal (n = 49), adenoma (n = 49), and tumour (n = 49)...
Hierarchical clustering of average CGI + SS patterns for colon tissues. (PDF 135 kb