TF diversification scores and random forest prediction accuracies. (CSV 609 bytes
Supporting figures. Figure S1. Hierarchical structures of the GM12878 TFs network. Figure S2. Percen...
Table S3. Predicted breast cancer driver genes by the seven permutation models. Table S4. Predicted ...
Figure S4. Cooperativity between TFs results in steeper binding curves. The predicted fractional TF ...
The RMD module matrix and summary for K562, GM12878, and K562 direct versus indirect binding, respec...
The overlap between RMD modules and published protein-protein interactions. (XLS 25Â kb
The complete transcription factor annotation results. âLog10 (P value) are provided in parentheses...
The completed BASE 2.0 results of each motif, defining the TF binding affinities as motif frequencie...
RWR performance according to gene function. Functions correspond to Gene Ontology molecular function...
Supplementary Tables and Figures. Figures S1 to S9. Tables S1 to S14. Text S1—Tools for predicting i...
Supplementary Tables: contains supplementary tables referenced in the main manuscript (CSV 2 kb
Supplementary Results, Methods, Figures (S1-S12), Tables (S1-S5, and S9). Tables S6, S7, S8, S10, S1...
Functional Annotation Clustering output from DAVID enrichment analysis. (XLS 1695 kb
Figure S6. Comparison of unique k-mer number passing 0.1 % top PWM score threshold in genomic backgr...
The raw transcription factorâtarget gene (TFTG) relationships in GMT file format for 20,000bp wind...
Supplementary material: database of the computed transcription factor binding probabilities. We repo...
Supporting figures. Figure S1. Hierarchical structures of the GM12878 TFs network. Figure S2. Percen...
Table S3. Predicted breast cancer driver genes by the seven permutation models. Table S4. Predicted ...
Figure S4. Cooperativity between TFs results in steeper binding curves. The predicted fractional TF ...
The RMD module matrix and summary for K562, GM12878, and K562 direct versus indirect binding, respec...
The overlap between RMD modules and published protein-protein interactions. (XLS 25Â kb
The complete transcription factor annotation results. âLog10 (P value) are provided in parentheses...
The completed BASE 2.0 results of each motif, defining the TF binding affinities as motif frequencie...
RWR performance according to gene function. Functions correspond to Gene Ontology molecular function...
Supplementary Tables and Figures. Figures S1 to S9. Tables S1 to S14. Text S1—Tools for predicting i...
Supplementary Tables: contains supplementary tables referenced in the main manuscript (CSV 2 kb
Supplementary Results, Methods, Figures (S1-S12), Tables (S1-S5, and S9). Tables S6, S7, S8, S10, S1...
Functional Annotation Clustering output from DAVID enrichment analysis. (XLS 1695 kb
Figure S6. Comparison of unique k-mer number passing 0.1 % top PWM score threshold in genomic backgr...
The raw transcription factorâtarget gene (TFTG) relationships in GMT file format for 20,000bp wind...
Supplementary material: database of the computed transcription factor binding probabilities. We repo...
Supporting figures. Figure S1. Hierarchical structures of the GM12878 TFs network. Figure S2. Percen...
Table S3. Predicted breast cancer driver genes by the seven permutation models. Table S4. Predicted ...
Figure S4. Cooperativity between TFs results in steeper binding curves. The predicted fractional TF ...
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