Supplementary Results, Methods, Figures (S1-S12), Tables (S1-S5, and S9). Tables S6, S7, S8, S10, S11 are available as separate files. Tables S10 and S11 correspond to the raw transcription factor–target gene (TFTG) relationships for 6000 and 20,000 windows, respectively, in GMT format [45, 47–49, 51–62, 71, 89, 90, 92–115, 119–121, 139–147, 155]. (DOCX 7176 kb
Additional file 6: Comparison of lists of regulated target genes generated here (ART-TF) with existi...
Detailed expression values (TPM) for RFX TSS locations. Expression values in tags per million (TPM) ...
Additional file 4: Number of regulated target genes of individual transcription factors combined fro...
The raw transcription factorâtarget gene (TFTG) relationships in GMT file format for 20,000bp wind...
The complete transcription factor annotation results. âLog10 (P value) are provided in parentheses...
Test Dataset. This file contains an example test dataset where our method can be implemented. This s...
The complete list of TF pairs with significant target function overlaps but lower than expected targ...
Supplementary Tables and Figures. Figures S1 to S9. Tables S1 to S14. Text S1—Tools for predicting i...
Supporting figures. Figure S1. Hierarchical structures of the GM12878 TFs network. Figure S2. Percen...
Table S1. The brief introduction of two cell lines. Table S2. Transcription factors associated with ...
Additional file 2: Regulated targets of transcription factors identified based on each ChIP-seq data...
GWAS information. Table S2. SMR results (P SMR <8.4 × 10–6). Table S3. SMR and HEIDI results (P HEID...
Functional Annotation Clustering output from DAVID enrichment analysis. (XLS 1695 kb
PC-TraFF analysis with different distance constrains. Significant pairs found by PC-TraFF using diff...
Additional file 1: ChIP-seq data used for identifying regulated targets of human transcription facto...
Additional file 6: Comparison of lists of regulated target genes generated here (ART-TF) with existi...
Detailed expression values (TPM) for RFX TSS locations. Expression values in tags per million (TPM) ...
Additional file 4: Number of regulated target genes of individual transcription factors combined fro...
The raw transcription factorâtarget gene (TFTG) relationships in GMT file format for 20,000bp wind...
The complete transcription factor annotation results. âLog10 (P value) are provided in parentheses...
Test Dataset. This file contains an example test dataset where our method can be implemented. This s...
The complete list of TF pairs with significant target function overlaps but lower than expected targ...
Supplementary Tables and Figures. Figures S1 to S9. Tables S1 to S14. Text S1—Tools for predicting i...
Supporting figures. Figure S1. Hierarchical structures of the GM12878 TFs network. Figure S2. Percen...
Table S1. The brief introduction of two cell lines. Table S2. Transcription factors associated with ...
Additional file 2: Regulated targets of transcription factors identified based on each ChIP-seq data...
GWAS information. Table S2. SMR results (P SMR <8.4 × 10–6). Table S3. SMR and HEIDI results (P HEID...
Functional Annotation Clustering output from DAVID enrichment analysis. (XLS 1695 kb
PC-TraFF analysis with different distance constrains. Significant pairs found by PC-TraFF using diff...
Additional file 1: ChIP-seq data used for identifying regulated targets of human transcription facto...
Additional file 6: Comparison of lists of regulated target genes generated here (ART-TF) with existi...
Detailed expression values (TPM) for RFX TSS locations. Expression values in tags per million (TPM) ...
Additional file 4: Number of regulated target genes of individual transcription factors combined fro...