Table S1. The brief introduction of two cell lines. Table S2. Transcription factors associated with cancer in the 55TFs. Table S3. The definition of the average overlap ratio for TF1 with m peaks. Figure S1. The overlap ratios of 11 HMs with 55 TFs in GM12878. Figure S2.The distribution of gene FPKM values in GM12878 and K562 (DOCX 52 kb
A table listing the gene ontology terms of differentially expressed genes between MCF-10A and MCF-7 ...
Table S1. Differential expression genes between L and P6 cell lines. Table S2. Differential expressi...
Table S4. List of genes with subtype specific active transcription states. (XLS 44Â kb
Figure S1. Enrichment of histone modification ChIP-seq signals pooled from all sampled in (A) transc...
Figure S1. Further dissection of TF site occupancy and spatial co-localization. Figure S2. The relat...
Supporting figures. Figure S1. Hierarchical structures of the GM12878 TFs network. Figure S2. Percen...
Figure S1. Multiple modifications on two peptides of histone H3 and H4. Figure S2. The proteomic pat...
Overlap between sets of significant targets of a TF in pairs of tumor types. (XLS 69 kb
Table S1. Sources for TF binding data. Table S2. Co-localization of lymphoblastoid TF pairs. Table S...
Illustration of the fused network communities of TFs and the overlapping communities of GM12878 cell...
Table S1. List of the relative abundance of all histone peptides. Table S2. List of the relative abu...
Relative enrichment of driver TFs domains for somatic mutations across approximately 7,000 tumors. (...
Figure S1. Comparisons of gene sets that are differentially or similarly expressed in BT-474, MCF7, ...
Figure S5. Spearman correlation of H3K36me3 occupancy and gene expression levels in all samples. (PD...
Table S8. Significant pathways of subtype gene signatures of active transcription states and active ...
A table listing the gene ontology terms of differentially expressed genes between MCF-10A and MCF-7 ...
Table S1. Differential expression genes between L and P6 cell lines. Table S2. Differential expressi...
Table S4. List of genes with subtype specific active transcription states. (XLS 44Â kb
Figure S1. Enrichment of histone modification ChIP-seq signals pooled from all sampled in (A) transc...
Figure S1. Further dissection of TF site occupancy and spatial co-localization. Figure S2. The relat...
Supporting figures. Figure S1. Hierarchical structures of the GM12878 TFs network. Figure S2. Percen...
Figure S1. Multiple modifications on two peptides of histone H3 and H4. Figure S2. The proteomic pat...
Overlap between sets of significant targets of a TF in pairs of tumor types. (XLS 69 kb
Table S1. Sources for TF binding data. Table S2. Co-localization of lymphoblastoid TF pairs. Table S...
Illustration of the fused network communities of TFs and the overlapping communities of GM12878 cell...
Table S1. List of the relative abundance of all histone peptides. Table S2. List of the relative abu...
Relative enrichment of driver TFs domains for somatic mutations across approximately 7,000 tumors. (...
Figure S1. Comparisons of gene sets that are differentially or similarly expressed in BT-474, MCF7, ...
Figure S5. Spearman correlation of H3K36me3 occupancy and gene expression levels in all samples. (PD...
Table S8. Significant pathways of subtype gene signatures of active transcription states and active ...
A table listing the gene ontology terms of differentially expressed genes between MCF-10A and MCF-7 ...
Table S1. Differential expression genes between L and P6 cell lines. Table S2. Differential expressi...
Table S4. List of genes with subtype specific active transcription states. (XLS 44Â kb