Table S2. p-values and corrected p-values from TE-Analysis pipeline for active regions (permutation test). For each TE family, uncorrected p-values from permutation analysis for ACTIVE regions are reported. Corrected p-values (FDR) for the ENRICHED TEs are found in the second sheet. (XLSX 121 kb
Figure S1. A) The proportion of recovered enhancer associated genes (EAG) as a function of random su...
List of human polyTE loci with allele frequencies and FST and δ values. (XLSX 73 kb
Functional enrichment and GO term enrichment tests. a Functional enrichment tests of genes that exhi...
Table S3. p-values and corrected p-values from TE-Analysis pipeline for repressed regions (permutati...
Table S5. Analysis of tissue specific enrichment in active regions. For each TE enriched in active r...
Table S7. Analysis of correlation between TE insertion and gene expression variance. Normalized GTEx...
Table S6. Analysis of age classes across tissues. FDR values for TE age enrichment/depletion across ...
Table S1. Tissues analyzed in the paper, with Roadmap ID codes. List of the 24 tissues analyzed in t...
It contains two folders “TE_PIPELINE_SUMMARY_STATISTICS_ACTIVE” “TE_PIPELINE_SUMMARY_STATISTICS_REPR...
Table S4. Analysis of histone marks in repressed regions. For each tissue, the numbers of repressed ...
Additional file 1 from "Statistical learning quantifies transposable element-mediated cis-regulation...
This file contains the frequency of TE insertions in 10 hot-evolved replicates at generation 60. For...
Additional file 1: Table S1. Differences in TE subfamily cis-regulatory activities estimated by craT...
Sample-level examination of intersections between TE detection methods. (XLSX 6 kb
Differential mean values of enrichment for each histone modification and for each gene category acco...
Figure S1. A) The proportion of recovered enhancer associated genes (EAG) as a function of random su...
List of human polyTE loci with allele frequencies and FST and δ values. (XLSX 73 kb
Functional enrichment and GO term enrichment tests. a Functional enrichment tests of genes that exhi...
Table S3. p-values and corrected p-values from TE-Analysis pipeline for repressed regions (permutati...
Table S5. Analysis of tissue specific enrichment in active regions. For each TE enriched in active r...
Table S7. Analysis of correlation between TE insertion and gene expression variance. Normalized GTEx...
Table S6. Analysis of age classes across tissues. FDR values for TE age enrichment/depletion across ...
Table S1. Tissues analyzed in the paper, with Roadmap ID codes. List of the 24 tissues analyzed in t...
It contains two folders “TE_PIPELINE_SUMMARY_STATISTICS_ACTIVE” “TE_PIPELINE_SUMMARY_STATISTICS_REPR...
Table S4. Analysis of histone marks in repressed regions. For each tissue, the numbers of repressed ...
Additional file 1 from "Statistical learning quantifies transposable element-mediated cis-regulation...
This file contains the frequency of TE insertions in 10 hot-evolved replicates at generation 60. For...
Additional file 1: Table S1. Differences in TE subfamily cis-regulatory activities estimated by craT...
Sample-level examination of intersections between TE detection methods. (XLSX 6 kb
Differential mean values of enrichment for each histone modification and for each gene category acco...
Figure S1. A) The proportion of recovered enhancer associated genes (EAG) as a function of random su...
List of human polyTE loci with allele frequencies and FST and δ values. (XLSX 73 kb
Functional enrichment and GO term enrichment tests. a Functional enrichment tests of genes that exhi...