Added support for groups coloring on repClonalFamily() visualization with .vis_groups argument Added support for MiXCR 4.1 input format Added support for AIRR and 10x input formats for BCR pipeline Fixed bug in repClonalFamily() with running phylip dnapars on Windows Various small bugfixe
Added colour map argument when specifying groupsIf you use this software, please cite it as below
Major changes Alignments are forced to the corresponding edge if the same V/J gene is detected in t...
Fixes NPE in very rare cases with incompatible V gene selection for assembleContigs in case of parti...
BCR pipeline implementation: seqDist(), seqCluster(), repGermline(), repAlignLineage() and repClonal...
BCR pipeline now requires less columns in the input data: only nucleotide sequences of FR1-4 and CDR...
immunarch 0.5.5 We are 0.5.5 now! This is a minor release. Data input We fixed incorrect parsing ...
New function repSomaticHypermutation() to calculate number of mutations against the germline for eac...
10x format in repLoad(): added C genes support Support for vdjtools format with "freq" header instea...
immunarch 0.4.1 Features feat(diversity): aded a column choice for repDiversity Bug fixes fi...
immunarch 0.4.0 Features The trackClonotype function for tracking clonotypes. Visualisations for t...
fix(vignette): fix incorrect CRAN links in the Introduction vignette refactor(data): make the data s...
fixed a bug in mdaplot when using a factor with more than 8 levels for color grouping led to an erro...
Updated to include: Table of alleles for calling AMR mutations Table of alleles for calling genotyp...
Fixed bugs related to grouping correlated features (#276, @kelly-sovacool). Also, group_correlated_f...
Major changes Fixes clone oversplitting in assembleContigs in noizy (e.g. single-cell) data with su...
Added colour map argument when specifying groupsIf you use this software, please cite it as below
Major changes Alignments are forced to the corresponding edge if the same V/J gene is detected in t...
Fixes NPE in very rare cases with incompatible V gene selection for assembleContigs in case of parti...
BCR pipeline implementation: seqDist(), seqCluster(), repGermline(), repAlignLineage() and repClonal...
BCR pipeline now requires less columns in the input data: only nucleotide sequences of FR1-4 and CDR...
immunarch 0.5.5 We are 0.5.5 now! This is a minor release. Data input We fixed incorrect parsing ...
New function repSomaticHypermutation() to calculate number of mutations against the germline for eac...
10x format in repLoad(): added C genes support Support for vdjtools format with "freq" header instea...
immunarch 0.4.1 Features feat(diversity): aded a column choice for repDiversity Bug fixes fi...
immunarch 0.4.0 Features The trackClonotype function for tracking clonotypes. Visualisations for t...
fix(vignette): fix incorrect CRAN links in the Introduction vignette refactor(data): make the data s...
fixed a bug in mdaplot when using a factor with more than 8 levels for color grouping led to an erro...
Updated to include: Table of alleles for calling AMR mutations Table of alleles for calling genotyp...
Fixed bugs related to grouping correlated features (#276, @kelly-sovacool). Also, group_correlated_f...
Major changes Fixes clone oversplitting in assembleContigs in noizy (e.g. single-cell) data with su...
Added colour map argument when specifying groupsIf you use this software, please cite it as below
Major changes Alignments are forced to the corresponding edge if the same V/J gene is detected in t...
Fixes NPE in very rare cases with incompatible V gene selection for assembleContigs in case of parti...