10x format in repLoad(): added C genes support Support for vdjtools format with "freq" header instead of "frequency" Bugfix for filter: exclude must not remove everything when string is not matching Germline formulas fixes Fixed "missing value" error in repDiversity Deprecated .format argument removed from repLoad Various bugfixes in code and documentatio
This is webMCP-counter v1.1, a shiny app for MCP-counter and mMCP-counter. These are tools that allo...
Enhancing GTF Handling Bugs in GTF Handling when the "gene" annotation was not presen
Major changes Built-in library upgraded to 1.5, many genes updated / added (see library changelog f...
BCR pipeline implementation: seqDist(), seqCluster(), repGermline(), repAlignLineage() and repClonal...
Added support for groups coloring on repClonalFamily() visualization with .vis_groups argument Added...
BCR pipeline now requires less columns in the input data: only nucleotide sequences of FR1-4 and CDR...
immunarch 0.5.5 We are 0.5.5 now! This is a minor release. Data input We fixed incorrect parsing ...
immunarch 0.4.1 Features feat(diversity): aded a column choice for repDiversity Bug fixes fi...
New function repSomaticHypermutation() to calculate number of mutations against the germline for eac...
immunarch 0.4.3 Features chore(upkeep): add new vignettes to the website feat(io): add a correct pa...
The cDNA sequences of immunoglobulins (IG) and T cell receptors (TR) represent more than one half of...
BackgroundThe genes that produce antibodies and the immune receptors expressed on lymphocytes are no...
Major changes Alignments are forced to the corresponding edge if the same V/J gene is detected in t...
Fixed allele frequency biases that occurred due to missed evidence when investigating breakends. Fix...
Fixes NPE in very rare cases with incompatible V gene selection for assembleContigs in case of parti...
This is webMCP-counter v1.1, a shiny app for MCP-counter and mMCP-counter. These are tools that allo...
Enhancing GTF Handling Bugs in GTF Handling when the "gene" annotation was not presen
Major changes Built-in library upgraded to 1.5, many genes updated / added (see library changelog f...
BCR pipeline implementation: seqDist(), seqCluster(), repGermline(), repAlignLineage() and repClonal...
Added support for groups coloring on repClonalFamily() visualization with .vis_groups argument Added...
BCR pipeline now requires less columns in the input data: only nucleotide sequences of FR1-4 and CDR...
immunarch 0.5.5 We are 0.5.5 now! This is a minor release. Data input We fixed incorrect parsing ...
immunarch 0.4.1 Features feat(diversity): aded a column choice for repDiversity Bug fixes fi...
New function repSomaticHypermutation() to calculate number of mutations against the germline for eac...
immunarch 0.4.3 Features chore(upkeep): add new vignettes to the website feat(io): add a correct pa...
The cDNA sequences of immunoglobulins (IG) and T cell receptors (TR) represent more than one half of...
BackgroundThe genes that produce antibodies and the immune receptors expressed on lymphocytes are no...
Major changes Alignments are forced to the corresponding edge if the same V/J gene is detected in t...
Fixed allele frequency biases that occurred due to missed evidence when investigating breakends. Fix...
Fixes NPE in very rare cases with incompatible V gene selection for assembleContigs in case of parti...
This is webMCP-counter v1.1, a shiny app for MCP-counter and mMCP-counter. These are tools that allo...
Enhancing GTF Handling Bugs in GTF Handling when the "gene" annotation was not presen
Major changes Built-in library upgraded to 1.5, many genes updated / added (see library changelog f...