BCR pipeline implementation: seqDist(), seqCluster(), repGermline(), repAlignLineage() and repClonalFamily() functions New example data for BCR: small version can be loaded with data(bcrdata), large version is available on this page in Resources MiXCR parser in repLoad() now loads C genes, CDR3 begin/end coordinates and number of insertions/deletions in V and J genes Added parameter for vis_heatmap(): .axis.text.size Various bugfixes in code and documentatio
The highly variable complementary determining region 3 (CDR3) of antibodies is generated through rec...
These are the processed BCR repertoire bulk sequencing data described in Turner & O'Halloran et al.,...
Motivation: Recombined T and B cell receptor repertoires are increasingly being studied using next g...
BCR pipeline now requires less columns in the input data: only nucleotide sequences of FR1-4 and CDR...
New function repSomaticHypermutation() to calculate number of mutations against the germline for eac...
immunarch 0.4.0 Features The trackClonotype function for tracking clonotypes. Visualisations for t...
immunarch 0.4.1 Features feat(diversity): aded a column choice for repDiversity Bug fixes fi...
10x format in repLoad(): added C genes support Support for vdjtools format with "freq" header instea...
immunarch 0.5.5 We are 0.5.5 now! This is a minor release. Data input We fixed incorrect parsing ...
Antigen Receptor Galaxy (ARGalaxy) is a Web-based tool for analyses and visualization of TCR and BCR...
The study of antigen receptor gene repertoires using next-generation sequencing (NGS) technologies h...
Review on BCR (breakpoint cluster region), with data on DNA, on the protein encoded, and where the g...
<p>(<b>A</b>) An assembly of ChIP-seq data for the Ubr1 (chromosome 2) and (<b>B</b>) Ate1 (chromoso...
Major changes New command assembleContigs for assembling longest possible contig TCR/IG receptor se...
immunarch 0.4.3 Features chore(upkeep): add new vignettes to the website feat(io): add a correct pa...
The highly variable complementary determining region 3 (CDR3) of antibodies is generated through rec...
These are the processed BCR repertoire bulk sequencing data described in Turner & O'Halloran et al.,...
Motivation: Recombined T and B cell receptor repertoires are increasingly being studied using next g...
BCR pipeline now requires less columns in the input data: only nucleotide sequences of FR1-4 and CDR...
New function repSomaticHypermutation() to calculate number of mutations against the germline for eac...
immunarch 0.4.0 Features The trackClonotype function for tracking clonotypes. Visualisations for t...
immunarch 0.4.1 Features feat(diversity): aded a column choice for repDiversity Bug fixes fi...
10x format in repLoad(): added C genes support Support for vdjtools format with "freq" header instea...
immunarch 0.5.5 We are 0.5.5 now! This is a minor release. Data input We fixed incorrect parsing ...
Antigen Receptor Galaxy (ARGalaxy) is a Web-based tool for analyses and visualization of TCR and BCR...
The study of antigen receptor gene repertoires using next-generation sequencing (NGS) technologies h...
Review on BCR (breakpoint cluster region), with data on DNA, on the protein encoded, and where the g...
<p>(<b>A</b>) An assembly of ChIP-seq data for the Ubr1 (chromosome 2) and (<b>B</b>) Ate1 (chromoso...
Major changes New command assembleContigs for assembling longest possible contig TCR/IG receptor se...
immunarch 0.4.3 Features chore(upkeep): add new vignettes to the website feat(io): add a correct pa...
The highly variable complementary determining region 3 (CDR3) of antibodies is generated through rec...
These are the processed BCR repertoire bulk sequencing data described in Turner & O'Halloran et al.,...
Motivation: Recombined T and B cell receptor repertoires are increasingly being studied using next g...