Immunarch: An R Package for Painless Analysis of Large-Scale Immune Repertoire Data

immunarch 0.4.1 Features feat(diversity): aded a column choice for repDiversity Bug fixes fix(clonality): fix docs in repDiversity, prepare to CRAN check fix(diversity): fix docs in repDiversity, prepare to CRAN check fix(diversity): fix R check from repDiversity fix(gene-usage): add a comment for a future fix, make it work with data.tables properly fix(io): fix a bug when .compress=F doesn't work in repSave if .format = "immunarch" fix(package): fix CRAN NOTE about dtplyr fix(package): change version to 0.4.0.9000 and fix the description for the CRAN release fix(public-repertoire): fix .coding doesn't work fix(tests): fix clonality tests fix(tests): fix spectratyping tests fix(tests): fix overlap tests fix(tests): remove unnecessary print() from spectratype testing fix(vignette): fix spectratype in the vignette Minor updates Continuous integration process improved. We are heading towards improvements in code and commit organization in the repository. Some parts were refactored: explore, inst, io, kmers, overlap, package, public-repertoire, shiny, spectratype, tests. Improved tests for: clonality, diversity, dynamics, explore, gene-usage, kmers, overlap, public-repertoire. Docs: general improvements, fixed typos