Major changes Fixes clone oversplitting in assembleContigs in noizy (e.g. single-cell) data with substanial fraction of sequences with errors in CDR3 Fixes wrong alignment-scoring-based filtering in pre-clustering procedure Fixes rare bug in export of imputed gene feature sequences Minor changes Better error message for mutation extraction from alignment-attached gene feature
Built-in library upgrade to v1.5, many fixes, new species Nannospalax galili (see library release no...
Fixes V/J/C oversplitting issue in noizy data Additional fix for empty block exception in assemble a...
Minimal thresholds added for V and J alignments in extendAlignments minimalNOverlap in assembleParti...
Fixes NPE in very rare cases with incompatible V gene selection for assembleContigs in case of parti...
Major changes Alignments are forced to the corresponding edge if the same V/J gene is detected in t...
Major changes New command assembleContigs for assembling longest possible contig TCR/IG receptor se...
Major fix for analyze action (wrong aligner paramters were used before) Also several minor fixes to ...
Fixed problem with possibly incorrect clone-to-alignment mapping and clonotype sorting. The problem ...
Fixes rare inconsistency in behaviour between paired-end and single-end aligners, clone assembler an...
Fixed bug with wrong V gene selection in assembleContigs. analyze doesn't use .clna when contig asse...
Additional fix for error in exportAlignments / exportClones with repeated non-parametrized options A...
Fixes exception in assemble for multi-assembling-feature cases with zero length sequences Fixes empt...
Major review of all analysis steps for non-enriched libraries (RNA-Seq, etc...). Efficiency of TCR/I...
Major changes Additional check for the same V hits in merging sequences in assemblePartial Fix: lis...
Chain distribution is back in report file V/J chimera detection and elimination mechanism; new param...
Built-in library upgrade to v1.5, many fixes, new species Nannospalax galili (see library release no...
Fixes V/J/C oversplitting issue in noizy data Additional fix for empty block exception in assemble a...
Minimal thresholds added for V and J alignments in extendAlignments minimalNOverlap in assembleParti...
Fixes NPE in very rare cases with incompatible V gene selection for assembleContigs in case of parti...
Major changes Alignments are forced to the corresponding edge if the same V/J gene is detected in t...
Major changes New command assembleContigs for assembling longest possible contig TCR/IG receptor se...
Major fix for analyze action (wrong aligner paramters were used before) Also several minor fixes to ...
Fixed problem with possibly incorrect clone-to-alignment mapping and clonotype sorting. The problem ...
Fixes rare inconsistency in behaviour between paired-end and single-end aligners, clone assembler an...
Fixed bug with wrong V gene selection in assembleContigs. analyze doesn't use .clna when contig asse...
Additional fix for error in exportAlignments / exportClones with repeated non-parametrized options A...
Fixes exception in assemble for multi-assembling-feature cases with zero length sequences Fixes empt...
Major review of all analysis steps for non-enriched libraries (RNA-Seq, etc...). Efficiency of TCR/I...
Major changes Additional check for the same V hits in merging sequences in assemblePartial Fix: lis...
Chain distribution is back in report file V/J chimera detection and elimination mechanism; new param...
Built-in library upgrade to v1.5, many fixes, new species Nannospalax galili (see library release no...
Fixes V/J/C oversplitting issue in noizy data Additional fix for empty block exception in assemble a...
Minimal thresholds added for V and J alignments in extendAlignments minimalNOverlap in assembleParti...