Check added by @vinisalazar looking for duplicates in user-provided mapping file, previously would run entire analysis, not produce a tree, and have duplicate entries in the alignment file. Now it exits at start with notice
adding small compensation if any white space after accessions in ncbi accessions input file changin...
Cancelling the run immediately and notifying user if -L desired lineage information was provided, bu...
improvements to working with GTDB (in main script and in gtt-get-accessions-from-GTDB) improvements ...
added checks for duplicates, tabs, and/or spaces in input fasta, amino-acid, and genbank main file
added checks for duplicates, tabs, and/or spaces in input fasta, amino-acid, and genbank main file
added in check for special characters in user-provided mapping file, re: https://github.com/Astrobio...
better checking and error message improvement when input accessions file format has problems, and wh...
adding final removal of all semi-colons from new labels; prior to this, the user-provided mapping fi...
adding in faster alignment settings when working with >= 5000 genomes, and notice about it pointing ...
added gtt-cat-alignments to perform concatenation of multiple-sequence alignment files rather than u...
fix to label swapping when mapping file specified an append only (column 3 present, but column 2 emp...
fixing mistake in summary table reporting which genomes were retained in the final alignment Codebas...
adding helper script to remove all-gap seqs from alignment, gtt-remove-all-gap-seqs-from-alignmen
fix to slight miscalculation of estimated completeness when multiple gene-copies presen
fixing a bug where output file final names might be odd if output directory wasn't in current workin...
adding small compensation if any white space after accessions in ncbi accessions input file changin...
Cancelling the run immediately and notifying user if -L desired lineage information was provided, bu...
improvements to working with GTDB (in main script and in gtt-get-accessions-from-GTDB) improvements ...
added checks for duplicates, tabs, and/or spaces in input fasta, amino-acid, and genbank main file
added checks for duplicates, tabs, and/or spaces in input fasta, amino-acid, and genbank main file
added in check for special characters in user-provided mapping file, re: https://github.com/Astrobio...
better checking and error message improvement when input accessions file format has problems, and wh...
adding final removal of all semi-colons from new labels; prior to this, the user-provided mapping fi...
adding in faster alignment settings when working with >= 5000 genomes, and notice about it pointing ...
added gtt-cat-alignments to perform concatenation of multiple-sequence alignment files rather than u...
fix to label swapping when mapping file specified an append only (column 3 present, but column 2 emp...
fixing mistake in summary table reporting which genomes were retained in the final alignment Codebas...
adding helper script to remove all-gap seqs from alignment, gtt-remove-all-gap-seqs-from-alignmen
fix to slight miscalculation of estimated completeness when multiple gene-copies presen
fixing a bug where output file final names might be odd if output directory wasn't in current workin...
adding small compensation if any white space after accessions in ncbi accessions input file changin...
Cancelling the run immediately and notifying user if -L desired lineage information was provided, bu...
improvements to working with GTDB (in main script and in gtt-get-accessions-from-GTDB) improvements ...
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