Publication date
August 2020
DOIAbstract
better checking and error message improvement when input accessions file format has problems, and when mapping file has unmatched label
better checking and error message improvement when input accessions file format has problems, and when mapping file has unmatched label
fixing a bug where output file final names might be odd if output directory wasn't in current workin...
update to gtdb version file download to coincide with their switch from "VERSION" to "VERSION.txt" (...
minor bug fixes; additional output report added Codebase: https://github.com/AstrobioMike/GToTree ...
added in check for special characters in user-provided mapping file, re: https://github.com/Astrobio...
adding small compensation if any white space after accessions in ncbi accessions input file changin...
improvements to working with GTDB (in main script and in gtt-get-accessions-from-GTDB) improvements ...
small fix to handle mapping file -m properly when user provides paths to input files in first column...
updating gtt-get-accessions-from-GTDB https://github.com/AstrobioMike/GToTree/commit/bbaec5893342e05...
Minor bug fixes; added output file of genes not found in any genome (if any) Codebase: https://githu...
added checks for duplicates, tabs, and/or spaces in input fasta, amino-acid, and genbank main file
added checks for duplicates, tabs, and/or spaces in input fasta, amino-acid, and genbank main file
updated gtt-genbank-to-AA-seqs to handle those without locus_tags improved gtt-gen-iToL-ma
added comprehensive helper program gtt-get-accessions-from-GTDB to facilitate accessing and utilizin...
Check added by @vinisalazar looking for duplicates in user-provided mapping file, previously would r...
fixing version disparity because i can never remember to update it with changes before release – i k...
fixing a bug where output file final names might be odd if output directory wasn't in current workin...
update to gtdb version file download to coincide with their switch from "VERSION" to "VERSION.txt" (...
minor bug fixes; additional output report added Codebase: https://github.com/AstrobioMike/GToTree ...
added in check for special characters in user-provided mapping file, re: https://github.com/Astrobio...
adding small compensation if any white space after accessions in ncbi accessions input file changin...
improvements to working with GTDB (in main script and in gtt-get-accessions-from-GTDB) improvements ...
small fix to handle mapping file -m properly when user provides paths to input files in first column...
updating gtt-get-accessions-from-GTDB https://github.com/AstrobioMike/GToTree/commit/bbaec5893342e05...
Minor bug fixes; added output file of genes not found in any genome (if any) Codebase: https://githu...
added checks for duplicates, tabs, and/or spaces in input fasta, amino-acid, and genbank main file
added checks for duplicates, tabs, and/or spaces in input fasta, amino-acid, and genbank main file
updated gtt-genbank-to-AA-seqs to handle those without locus_tags improved gtt-gen-iToL-ma
added comprehensive helper program gtt-get-accessions-from-GTDB to facilitate accessing and utilizin...
Check added by @vinisalazar looking for duplicates in user-provided mapping file, previously would r...
fixing version disparity because i can never remember to update it with changes before release – i k...
fixing a bug where output file final names might be odd if output directory wasn't in current workin...
update to gtdb version file download to coincide with their switch from "VERSION" to "VERSION.txt" (...
minor bug fixes; additional output report added Codebase: https://github.com/AstrobioMike/GToTree ...
Add to ORKG