Publication date
January 2019
DOIAbstract
minor bug fixes; additional output report added Codebase: https://github.com/AstrobioMike/GToTree Documentation: https://github.com/AstrobioMike/GToTree/wik
minor bug fixes; additional output report added Codebase: https://github.com/AstrobioMike/GToTree Documentation: https://github.com/AstrobioMike/GToTree/wik
fixing mistake in summary table reporting which genomes were retained in the final alignment Codebas...
better checking and error message improvement when input accessions file format has problems, and wh...
adding gtt-update-ncbi-taxonomy helper script to be able to easily keep the db up-to-date for use wi...
minor bug fixes Codebase: https://github.com/AstrobioMike/GToTree Documentation: https://github.co...
Initial release of GToTree! Codebase: https://github.com/AstrobioMike/GToTree Documentation: https:/...
Minor bug fixes; added output file of genes not found in any genome (if any) Codebase: https://githu...
Added in "conservative mode", minor bug fixes Codebase: https://github.com/AstrobioMike/GToTree Do...
update to gtdb version file download to coincide with their switch from "VERSION" to "VERSION.txt" (...
initial addition of iqtree, basic use right now (not yet doing partial models automatically) Codeba...
update to gtdb version file download (handled by helper program gtt-check-or-setup-GTDB-files) to co...
removing conda version check from conda-setup.sh script for now Codebase: https://github.com/Astrobi...
fixing a bug where output file final names might be odd if output directory wasn't in current workin...
added in check for special characters in user-provided mapping file, re: https://github.com/Astrobio...
improvements to working with GTDB (in main script and in gtt-get-accessions-from-GTDB) improvements ...
changed ncbi assembly summary download links because the ASSEMBLY_REPORTS directory seems to have di...
fixing mistake in summary table reporting which genomes were retained in the final alignment Codebas...
better checking and error message improvement when input accessions file format has problems, and wh...
adding gtt-update-ncbi-taxonomy helper script to be able to easily keep the db up-to-date for use wi...
minor bug fixes Codebase: https://github.com/AstrobioMike/GToTree Documentation: https://github.co...
Initial release of GToTree! Codebase: https://github.com/AstrobioMike/GToTree Documentation: https:/...
Minor bug fixes; added output file of genes not found in any genome (if any) Codebase: https://githu...
Added in "conservative mode", minor bug fixes Codebase: https://github.com/AstrobioMike/GToTree Do...
update to gtdb version file download to coincide with their switch from "VERSION" to "VERSION.txt" (...
initial addition of iqtree, basic use right now (not yet doing partial models automatically) Codeba...
update to gtdb version file download (handled by helper program gtt-check-or-setup-GTDB-files) to co...
removing conda version check from conda-setup.sh script for now Codebase: https://github.com/Astrobi...
fixing a bug where output file final names might be odd if output directory wasn't in current workin...
added in check for special characters in user-provided mapping file, re: https://github.com/Astrobio...
improvements to working with GTDB (in main script and in gtt-get-accessions-from-GTDB) improvements ...
changed ncbi assembly summary download links because the ASSEMBLY_REPORTS directory seems to have di...
fixing mistake in summary table reporting which genomes were retained in the final alignment Codebas...
better checking and error message improvement when input accessions file format has problems, and wh...
adding gtt-update-ncbi-taxonomy helper script to be able to easily keep the db up-to-date for use wi...
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