changed ncbi assembly summary download links because the ASSEMBLY_REPORTS directory seems to have disappeared from ncbi's ftp site for the time being Codebase: https://github.com/AstrobioMike/GToTree Documentation: https://github.com/AstrobioMike/GToTree/wik
fixing a bug where output file final names might be odd if output directory wasn't in current workin...
removing conda version check from conda-setup.sh script for now Codebase: https://github.com/Astrobi...
another attempt to make bit-dl-ncbi-assemblies more robust to instances where the assembly summary t...
Fixed hanging problem when download link was not in the ncbi assembly summary file for a given acces...
minor bug fixes; additional output report added Codebase: https://github.com/AstrobioMike/GToTree ...
changing from ftp to https for downloading ncbi assembly summary tables in bit-dl-ncbi-assemblies, a...
changing from ftp to https for downloading ncbi assembly summary tables in bit-dl-ncbi-assemblies, a...
genbank and refseq assembly summary tables are now cached instead of downloaded every run (https://g...
fixing mistake in summary table reporting which genomes were retained in the final alignment Codebas...
update to gtdb version file download to coincide with their switch from "VERSION" to "VERSION.txt" (...
Initial release of GToTree! Codebase: https://github.com/AstrobioMike/GToTree Documentation: https:/...
added http option to gtt-test.sh (gtt-test.sh http) thanks to https://github.com/AstrobioMike/GToTre...
minor bug fixes Codebase: https://github.com/AstrobioMike/GToTree Documentation: https://github.co...
Minor bug fixes; added output file of genes not found in any genome (if any) Codebase: https://githu...
update to gtdb version file download (handled by helper program gtt-check-or-setup-GTDB-files) to co...
fixing a bug where output file final names might be odd if output directory wasn't in current workin...
removing conda version check from conda-setup.sh script for now Codebase: https://github.com/Astrobi...
another attempt to make bit-dl-ncbi-assemblies more robust to instances where the assembly summary t...
Fixed hanging problem when download link was not in the ncbi assembly summary file for a given acces...
minor bug fixes; additional output report added Codebase: https://github.com/AstrobioMike/GToTree ...
changing from ftp to https for downloading ncbi assembly summary tables in bit-dl-ncbi-assemblies, a...
changing from ftp to https for downloading ncbi assembly summary tables in bit-dl-ncbi-assemblies, a...
genbank and refseq assembly summary tables are now cached instead of downloaded every run (https://g...
fixing mistake in summary table reporting which genomes were retained in the final alignment Codebas...
update to gtdb version file download to coincide with their switch from "VERSION" to "VERSION.txt" (...
Initial release of GToTree! Codebase: https://github.com/AstrobioMike/GToTree Documentation: https:/...
added http option to gtt-test.sh (gtt-test.sh http) thanks to https://github.com/AstrobioMike/GToTre...
minor bug fixes Codebase: https://github.com/AstrobioMike/GToTree Documentation: https://github.co...
Minor bug fixes; added output file of genes not found in any genome (if any) Codebase: https://githu...
update to gtdb version file download (handled by helper program gtt-check-or-setup-GTDB-files) to co...
fixing a bug where output file final names might be odd if output directory wasn't in current workin...
removing conda version check from conda-setup.sh script for now Codebase: https://github.com/Astrobi...
another attempt to make bit-dl-ncbi-assemblies more robust to instances where the assembly summary t...
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