Publication date
August 2019
DOIAbstract
Fixed hanging problem when download link was not in the ncbi assembly summary file for a given accession that was found. This happens very infrequently, but happens. Previously the program would hang
Fixed hanging problem when download link was not in the ncbi assembly summary file for a given accession that was found. This happens very infrequently, but happens. Previously the program would hang
sigh, within-program version needed to be bumped along with last changes and i haven't yet figured o...
minor bug fix: modifying when gtotree terminates due to an input genome shorter than 100,000 bps to ...
minor bug fixes; additional output report added Codebase: https://github.com/AstrobioMike/GToTree ...
changed ncbi assembly summary download links because the ASSEMBLY_REPORTS directory seems to have di...
better checking and error message improvement when input accessions file format has problems, and wh...
update to gtdb version file download to coincide with their switch from "VERSION" to "VERSION.txt" (...
Minor bug fixes; added output file of genes not found in any genome (if any) Codebase: https://githu...
Fixing bit-dl-ncbi-accessions new problem if a target file type doesn't exist. Previously, the downl...
genbank and refseq assembly summary tables are now cached instead of downloaded every run (https://g...
adding small compensation if any white space after accessions in ncbi accessions input file changin...
update to gtdb version file download (handled by helper program gtt-check-or-setup-GTDB-files) to co...
fixing a bug where output file final names might be odd if output directory wasn't in current workin...
added comprehensive helper program gtt-get-accessions-from-GTDB to facilitate accessing and utilizin...
updating gtt-get-accessions-from-GTDB https://github.com/AstrobioMike/GToTree/commit/bbaec5893342e05...
minor bug fixes Codebase: https://github.com/AstrobioMike/GToTree Documentation: https://github.co...
sigh, within-program version needed to be bumped along with last changes and i haven't yet figured o...
minor bug fix: modifying when gtotree terminates due to an input genome shorter than 100,000 bps to ...
minor bug fixes; additional output report added Codebase: https://github.com/AstrobioMike/GToTree ...
changed ncbi assembly summary download links because the ASSEMBLY_REPORTS directory seems to have di...
better checking and error message improvement when input accessions file format has problems, and wh...
update to gtdb version file download to coincide with their switch from "VERSION" to "VERSION.txt" (...
Minor bug fixes; added output file of genes not found in any genome (if any) Codebase: https://githu...
Fixing bit-dl-ncbi-accessions new problem if a target file type doesn't exist. Previously, the downl...
genbank and refseq assembly summary tables are now cached instead of downloaded every run (https://g...
adding small compensation if any white space after accessions in ncbi accessions input file changin...
update to gtdb version file download (handled by helper program gtt-check-or-setup-GTDB-files) to co...
fixing a bug where output file final names might be odd if output directory wasn't in current workin...
added comprehensive helper program gtt-get-accessions-from-GTDB to facilitate accessing and utilizin...
updating gtt-get-accessions-from-GTDB https://github.com/AstrobioMike/GToTree/commit/bbaec5893342e05...
minor bug fixes Codebase: https://github.com/AstrobioMike/GToTree Documentation: https://github.co...
sigh, within-program version needed to be bumped along with last changes and i haven't yet figured o...
minor bug fix: modifying when gtotree terminates due to an input genome shorter than 100,000 bps to ...
minor bug fixes; additional output report added Codebase: https://github.com/AstrobioMike/GToTree ...
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