Publication date
January 2019
DOIAbstract
Added in "conservative mode", minor bug fixes Codebase: https://github.com/AstrobioMike/GToTree Documentation: https://github.com/AstrobioMike/GToTree/wik
Added in "conservative mode", minor bug fixes Codebase: https://github.com/AstrobioMike/GToTree Documentation: https://github.com/AstrobioMike/GToTree/wik
adding gtt-update-ncbi-taxonomy helper script to be able to easily keep the db up-to-date for use wi...
fixing version disparity because i can never remember to update it with changes before release – i k...
fixing mistake in summary table reporting which genomes were retained in the final alignment Codebas...
minor bug fixes Codebase: https://github.com/AstrobioMike/GToTree Documentation: https://github.co...
minor bug fixes; additional output report added Codebase: https://github.com/AstrobioMike/GToTree ...
Initial release of GToTree! Codebase: https://github.com/AstrobioMike/GToTree Documentation: https:/...
Minor bug fixes; added output file of genes not found in any genome (if any) Codebase: https://githu...
added in check for special characters in user-provided mapping file, re: https://github.com/Astrobio...
update to gtdb version file download to coincide with their switch from "VERSION" to "VERSION.txt" (...
removing conda version check from conda-setup.sh script for now Codebase: https://github.com/Astrobi...
initial addition of iqtree, basic use right now (not yet doing partial models automatically) Codeba...
update to gtdb version file download (handled by helper program gtt-check-or-setup-GTDB-files) to co...
fix for conda version check fix for shell-environment localization variables in conda gtotree enviro...
incrementing version following some conda meta.yaml adjustments, as it seems to have led to a proble...
minor bug fixes switching tree extension back from .nwk to .tre because iToL recognizes .tre but not...
adding gtt-update-ncbi-taxonomy helper script to be able to easily keep the db up-to-date for use wi...
fixing version disparity because i can never remember to update it with changes before release – i k...
fixing mistake in summary table reporting which genomes were retained in the final alignment Codebas...
minor bug fixes Codebase: https://github.com/AstrobioMike/GToTree Documentation: https://github.co...
minor bug fixes; additional output report added Codebase: https://github.com/AstrobioMike/GToTree ...
Initial release of GToTree! Codebase: https://github.com/AstrobioMike/GToTree Documentation: https:/...
Minor bug fixes; added output file of genes not found in any genome (if any) Codebase: https://githu...
added in check for special characters in user-provided mapping file, re: https://github.com/Astrobio...
update to gtdb version file download to coincide with their switch from "VERSION" to "VERSION.txt" (...
removing conda version check from conda-setup.sh script for now Codebase: https://github.com/Astrobi...
initial addition of iqtree, basic use right now (not yet doing partial models automatically) Codeba...
update to gtdb version file download (handled by helper program gtt-check-or-setup-GTDB-files) to co...
fix for conda version check fix for shell-environment localization variables in conda gtotree enviro...
incrementing version following some conda meta.yaml adjustments, as it seems to have led to a proble...
minor bug fixes switching tree extension back from .nwk to .tre because iToL recognizes .tre but not...
adding gtt-update-ncbi-taxonomy helper script to be able to easily keep the db up-to-date for use wi...
fixing version disparity because i can never remember to update it with changes before release – i k...
fixing mistake in summary table reporting which genomes were retained in the final alignment Codebas...
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