Publication date
October 2022
DOIAbstract
added in check for special characters in user-provided mapping file, re: https://github.com/AstrobioMike/GToTree/issues/6
added in check for special characters in user-provided mapping file, re: https://github.com/AstrobioMike/GToTree/issues/6
Added in "conservative mode", minor bug fixes Codebase: https://github.com/AstrobioMike/GToTree Do...
update to gtdb version file download (handled by helper program gtt-check-or-setup-GTDB-files) to co...
updated gtt-genbank-to-AA-seqs to handle those without locus_tags improved gtt-gen-iToL-ma
better checking and error message improvement when input accessions file format has problems, and wh...
added checks for duplicates, tabs, and/or spaces in input fasta, amino-acid, and genbank main file
added checks for duplicates, tabs, and/or spaces in input fasta, amino-acid, and genbank main file
Minor bug fixes; added output file of genes not found in any genome (if any) Codebase: https://githu...
Initial release of GToTree! Codebase: https://github.com/AstrobioMike/GToTree Documentation: https:/...
adding final removal of all semi-colons from new labels; prior to this, the user-provided mapping fi...
small fix to handle mapping file -m properly when user provides paths to input files in first column...
minor bug fixes Codebase: https://github.com/AstrobioMike/GToTree Documentation: https://github.co...
minor bug fixes; additional output report added Codebase: https://github.com/AstrobioMike/GToTree ...
Check added by @vinisalazar looking for duplicates in user-provided mapping file, previously would r...
update to gtdb version file download to coincide with their switch from "VERSION" to "VERSION.txt" (...
improvements to working with GTDB (in main script and in gtt-get-accessions-from-GTDB) improvements ...
Added in "conservative mode", minor bug fixes Codebase: https://github.com/AstrobioMike/GToTree Do...
update to gtdb version file download (handled by helper program gtt-check-or-setup-GTDB-files) to co...
updated gtt-genbank-to-AA-seqs to handle those without locus_tags improved gtt-gen-iToL-ma
better checking and error message improvement when input accessions file format has problems, and wh...
added checks for duplicates, tabs, and/or spaces in input fasta, amino-acid, and genbank main file
added checks for duplicates, tabs, and/or spaces in input fasta, amino-acid, and genbank main file
Minor bug fixes; added output file of genes not found in any genome (if any) Codebase: https://githu...
Initial release of GToTree! Codebase: https://github.com/AstrobioMike/GToTree Documentation: https:/...
adding final removal of all semi-colons from new labels; prior to this, the user-provided mapping fi...
small fix to handle mapping file -m properly when user provides paths to input files in first column...
minor bug fixes Codebase: https://github.com/AstrobioMike/GToTree Documentation: https://github.co...
minor bug fixes; additional output report added Codebase: https://github.com/AstrobioMike/GToTree ...
Check added by @vinisalazar looking for duplicates in user-provided mapping file, previously would r...
update to gtdb version file download to coincide with their switch from "VERSION" to "VERSION.txt" (...
improvements to working with GTDB (in main script and in gtt-get-accessions-from-GTDB) improvements ...
Added in "conservative mode", minor bug fixes Codebase: https://github.com/AstrobioMike/GToTree Do...
update to gtdb version file download (handled by helper program gtt-check-or-setup-GTDB-files) to co...
updated gtt-genbank-to-AA-seqs to handle those without locus_tags improved gtt-gen-iToL-ma
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