Cancelling the run immediately and notifying user if -L desired lineage information was provided, but neither -t nor -D flags were set telling GToTree which taxonomy to use. Previously it would just run and not modify the headers of the output alignment or tree files
better checking and error message improvement when input accessions file format has problems, and wh...
minor bug fix: modifying when gtotree terminates due to an input genome shorter than 100,000 bps to ...
minor bug fix: modifying when gtotree terminates due to an input genome shorter than 100,000 bps to ...
can now add lineage info from GTDB if wanted with the -x flag supersedes NCBI lineage info from Taxo...
updated gtt-genbank-to-AA-seqs to handle those without locus_tags improved gtt-gen-iToL-ma
small, but important fix to rarely used -X parameter that was introduced in release 1.6.20 this is o...
added gtt-cat-alignments to perform concatenation of multiple-sequence alignment files rather than u...
Minor bug fixes; added output file of genes not found in any genome (if any) Codebase: https://githu...
fixing a bug where output file final names might be odd if output directory wasn't in current workin...
bug fix since addition of gtt-cat-alignments in 1.5.30, needed to adjust how the Partitions.txt file...
expanded functionality of gtt-subset-GTDB-accessions to now be able to select 1 random representativ...
updating gtt-get-accessions-from-GTDB https://github.com/AstrobioMike/GToTree/commit/bbaec5893342e05...
Now default mode is to use only genes found in single-copy in a given genome, unless "best-hit mode"...
fixing mistake in summary table reporting which genomes were retained in the final alignment Codebas...
adding final removal of all semi-colons from new labels; prior to this, the user-provided mapping fi...
better checking and error message improvement when input accessions file format has problems, and wh...
minor bug fix: modifying when gtotree terminates due to an input genome shorter than 100,000 bps to ...
minor bug fix: modifying when gtotree terminates due to an input genome shorter than 100,000 bps to ...
can now add lineage info from GTDB if wanted with the -x flag supersedes NCBI lineage info from Taxo...
updated gtt-genbank-to-AA-seqs to handle those without locus_tags improved gtt-gen-iToL-ma
small, but important fix to rarely used -X parameter that was introduced in release 1.6.20 this is o...
added gtt-cat-alignments to perform concatenation of multiple-sequence alignment files rather than u...
Minor bug fixes; added output file of genes not found in any genome (if any) Codebase: https://githu...
fixing a bug where output file final names might be odd if output directory wasn't in current workin...
bug fix since addition of gtt-cat-alignments in 1.5.30, needed to adjust how the Partitions.txt file...
expanded functionality of gtt-subset-GTDB-accessions to now be able to select 1 random representativ...
updating gtt-get-accessions-from-GTDB https://github.com/AstrobioMike/GToTree/commit/bbaec5893342e05...
Now default mode is to use only genes found in single-copy in a given genome, unless "best-hit mode"...
fixing mistake in summary table reporting which genomes were retained in the final alignment Codebas...
adding final removal of all semi-colons from new labels; prior to this, the user-provided mapping fi...
better checking and error message improvement when input accessions file format has problems, and wh...
minor bug fix: modifying when gtotree terminates due to an input genome shorter than 100,000 bps to ...
minor bug fix: modifying when gtotree terminates due to an input genome shorter than 100,000 bps to ...
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