fix to label swapping when mapping file specified an append only (column 3 present, but column 2 empty in input mapping file) sanity check if there is only 1 target gene: previously, genomes with 0 hits were allowed through despite default -G 0.5, now that is caught in the rare cases it shows up and they are appropriately remove
minor bug fix: modifying when gtotree terminates due to an input genome shorter than 100,000 bps to ...
added capability to start off with amino acid files of coding sequences as input improved handling o...
added checks for duplicates, tabs, and/or spaces in input fasta, amino-acid, and genbank main file
Now default mode is to use only genes found in single-copy in a given genome, unless "best-hit mode"...
better checking and error message improvement when input accessions file format has problems, and wh...
Minor bug fixes; added output file of genes not found in any genome (if any) Codebase: https://githu...
adding final removal of all semi-colons from new labels; prior to this, the user-provided mapping fi...
fixing mistake in summary table reporting which genomes were retained in the final alignment Codebas...
small, but important fix to rarely used -X parameter that was introduced in release 1.6.20 this is o...
expanded functionality of gtt-subset-GTDB-accessions to now be able to select 1 random representativ...
fix to slight miscalculation of estimated completeness when multiple gene-copies presen
small fix to handle mapping file -m properly when user provides paths to input files in first column...
added in check for special characters in user-provided mapping file, re: https://github.com/Astrobio...
More posix compatibility fixes Added output table of hit-counts per target-gene per genome Codebase:...
updated gtt-genbank-to-AA-seqs to handle those without locus_tags improved gtt-gen-iToL-ma
minor bug fix: modifying when gtotree terminates due to an input genome shorter than 100,000 bps to ...
added capability to start off with amino acid files of coding sequences as input improved handling o...
added checks for duplicates, tabs, and/or spaces in input fasta, amino-acid, and genbank main file
Now default mode is to use only genes found in single-copy in a given genome, unless "best-hit mode"...
better checking and error message improvement when input accessions file format has problems, and wh...
Minor bug fixes; added output file of genes not found in any genome (if any) Codebase: https://githu...
adding final removal of all semi-colons from new labels; prior to this, the user-provided mapping fi...
fixing mistake in summary table reporting which genomes were retained in the final alignment Codebas...
small, but important fix to rarely used -X parameter that was introduced in release 1.6.20 this is o...
expanded functionality of gtt-subset-GTDB-accessions to now be able to select 1 random representativ...
fix to slight miscalculation of estimated completeness when multiple gene-copies presen
small fix to handle mapping file -m properly when user provides paths to input files in first column...
added in check for special characters in user-provided mapping file, re: https://github.com/Astrobio...
More posix compatibility fixes Added output table of hit-counts per target-gene per genome Codebase:...
updated gtt-genbank-to-AA-seqs to handle those without locus_tags improved gtt-gen-iToL-ma
minor bug fix: modifying when gtotree terminates due to an input genome shorter than 100,000 bps to ...
added capability to start off with amino acid files of coding sequences as input improved handling o...
added checks for duplicates, tabs, and/or spaces in input fasta, amino-acid, and genbank main file
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