Publication date
December 2020
DOIAbstract
adding helper script to remove all-gap seqs from alignment, gtt-remove-all-gap-seqs-from-alignmen
adding helper script to remove all-gap seqs from alignment, gtt-remove-all-gap-seqs-from-alignmen
minor bug fixes; additional output report added Codebase: https://github.com/AstrobioMike/GToTree ...
added in check for special characters in user-provided mapping file, re: https://github.com/Astrobio...
fixing version disparity because i can never remember to update it with changes before release – i k...
added gtt-cat-alignments to perform concatenation of multiple-sequence alignment files rather than u...
bug fix since addition of gtt-cat-alignments in 1.5.30, needed to adjust how the Partitions.txt file...
adding in faster alignment settings when working with >= 5000 genomes, and notice about it pointing ...
minor bug fixes Codebase: https://github.com/AstrobioMike/GToTree Documentation: https://github.co...
fixing mistake in summary table reporting which genomes were retained in the final alignment Codebas...
adding another step for removal of colons and commas when swapping IDs to make sure they don't end u...
adding small compensation if any white space after accessions in ncbi accessions input file changin...
adding gtt-update-ncbi-taxonomy helper script to be able to easily keep the db up-to-date for use wi...
updated gtt-genbank-to-AA-seqs to handle those without locus_tags improved gtt-gen-iToL-ma
better checking and error message improvement when input accessions file format has problems, and wh...
Initial release of GToTree! Codebase: https://github.com/AstrobioMike/GToTree Documentation: https:/...
Added in "conservative mode", minor bug fixes Codebase: https://github.com/AstrobioMike/GToTree Do...
minor bug fixes; additional output report added Codebase: https://github.com/AstrobioMike/GToTree ...
added in check for special characters in user-provided mapping file, re: https://github.com/Astrobio...
fixing version disparity because i can never remember to update it with changes before release – i k...
added gtt-cat-alignments to perform concatenation of multiple-sequence alignment files rather than u...
bug fix since addition of gtt-cat-alignments in 1.5.30, needed to adjust how the Partitions.txt file...
adding in faster alignment settings when working with >= 5000 genomes, and notice about it pointing ...
minor bug fixes Codebase: https://github.com/AstrobioMike/GToTree Documentation: https://github.co...
fixing mistake in summary table reporting which genomes were retained in the final alignment Codebas...
adding another step for removal of colons and commas when swapping IDs to make sure they don't end u...
adding small compensation if any white space after accessions in ncbi accessions input file changin...
adding gtt-update-ncbi-taxonomy helper script to be able to easily keep the db up-to-date for use wi...
updated gtt-genbank-to-AA-seqs to handle those without locus_tags improved gtt-gen-iToL-ma
better checking and error message improvement when input accessions file format has problems, and wh...
Initial release of GToTree! Codebase: https://github.com/AstrobioMike/GToTree Documentation: https:/...
Added in "conservative mode", minor bug fixes Codebase: https://github.com/AstrobioMike/GToTree Do...
minor bug fixes; additional output report added Codebase: https://github.com/AstrobioMike/GToTree ...
added in check for special characters in user-provided mapping file, re: https://github.com/Astrobio...
fixing version disparity because i can never remember to update it with changes before release – i k...
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