Publication date
January 2019
DOIAbstract
adding another step for removal of colons and commas when swapping IDs to make sure they don't end up in alignments and mess with the newick trees outpu
adding another step for removal of colons and commas when swapping IDs to make sure they don't end up in alignments and mess with the newick trees outpu
adding small compensation if any white space after accessions in ncbi accessions input file changin...
small fix to handle mapping file -m properly when user provides paths to input files in first column...
update to gtdb version file download to coincide with their switch from "VERSION" to "VERSION.txt" (...
adding final removal of all semi-colons from new labels; prior to this, the user-provided mapping fi...
added in check for special characters in user-provided mapping file, re: https://github.com/Astrobio...
adding in faster alignment settings when working with >= 5000 genomes, and notice about it pointing ...
adding helper script to remove all-gap seqs from alignment, gtt-remove-all-gap-seqs-from-alignmen
minor bug fixes Codebase: https://github.com/AstrobioMike/GToTree Documentation: https://github.co...
Added in "conservative mode", minor bug fixes Codebase: https://github.com/AstrobioMike/GToTree Do...
better checking and error message improvement when input accessions file format has problems, and wh...
bug fix since addition of gtt-cat-alignments in 1.5.30, needed to adjust how the Partitions.txt file...
added gtt-cat-alignments to perform concatenation of multiple-sequence alignment files rather than u...
removing conda version check from conda-setup.sh script for now Codebase: https://github.com/Astrobi...
fixing mistake in summary table reporting which genomes were retained in the final alignment Codebas...
Initial release of GToTree! Codebase: https://github.com/AstrobioMike/GToTree Documentation: https:/...
adding small compensation if any white space after accessions in ncbi accessions input file changin...
small fix to handle mapping file -m properly when user provides paths to input files in first column...
update to gtdb version file download to coincide with their switch from "VERSION" to "VERSION.txt" (...
adding final removal of all semi-colons from new labels; prior to this, the user-provided mapping fi...
added in check for special characters in user-provided mapping file, re: https://github.com/Astrobio...
adding in faster alignment settings when working with >= 5000 genomes, and notice about it pointing ...
adding helper script to remove all-gap seqs from alignment, gtt-remove-all-gap-seqs-from-alignmen
minor bug fixes Codebase: https://github.com/AstrobioMike/GToTree Documentation: https://github.co...
Added in "conservative mode", minor bug fixes Codebase: https://github.com/AstrobioMike/GToTree Do...
better checking and error message improvement when input accessions file format has problems, and wh...
bug fix since addition of gtt-cat-alignments in 1.5.30, needed to adjust how the Partitions.txt file...
added gtt-cat-alignments to perform concatenation of multiple-sequence alignment files rather than u...
removing conda version check from conda-setup.sh script for now Codebase: https://github.com/Astrobi...
fixing mistake in summary table reporting which genomes were retained in the final alignment Codebas...
Initial release of GToTree! Codebase: https://github.com/AstrobioMike/GToTree Documentation: https:/...
adding small compensation if any white space after accessions in ncbi accessions input file changin...
small fix to handle mapping file -m properly when user provides paths to input files in first column...
update to gtdb version file download to coincide with their switch from "VERSION" to "VERSION.txt" (...
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