Counts for spectra assigned at the species level by the MEGAN5 LCA. Each row lists spectral counts assigned to a NCBI species level taxon in at least one NS or WS sample. The columns are paired, so that each NS sample is matched with its WS counterpart. The rows are sorted in descending order by the number of samples in which that species was assigned (using column Z)
Figure S3. Species detected ≥ 2.5% relative abundance in kefir samples using each species classifier...
Table S5. Relative abundances of species level operational taxonomic units (s-OTUs) in the subgingiv...
Table S3. Predicted functions in the salivary, supragingival and subgingival microbiomes. Values ar...
Counts for spectra assigned to SEED ontology proteins by MEGAN5. Each row lists spectral counts assi...
Complete edgeR results for spectra assigned to SEED proteins by MEGAN5, comparing WS vs. NS pairs. T...
ProbeSeq results as received from the HOMINGS core facility. The first worksheet provides read count...
Complete edgeR results for HOMINGS taxon probes, comparing Plaque vs. NS pairs. Each row summarizes ...
Clinical metadata for subjects. Lists each subjectâs age at time of sampling, gender, the universa...
Heat map of HOMINGS data. The color key is on a logarithmic scale. The Bray-Curtis distance metric w...
relative abundance patterns associated with sucrose-induced dysbiosis are conserved across taxonomic...
Table S2. Relative abundances of species level operational taxonomic units (s-OTUs) in the salivary ...
Figure S1. Number of OTUs, Shannonâs diversity index, and rarefaction curves. Figure S2. PCoA plot...
Supplementary figures for the manuscript. Figure S1. An example of a gel electrophoresis diagram of ...
Table S4. Relative abundances of species level operational taxonomic units (s-OTUs) in the supraging...
Figure S6. Dissimilarity plot based on the relative abundances of the 865 level-4 enzyme commission ...
Figure S3. Species detected ≥ 2.5% relative abundance in kefir samples using each species classifier...
Table S5. Relative abundances of species level operational taxonomic units (s-OTUs) in the subgingiv...
Table S3. Predicted functions in the salivary, supragingival and subgingival microbiomes. Values ar...
Counts for spectra assigned to SEED ontology proteins by MEGAN5. Each row lists spectral counts assi...
Complete edgeR results for spectra assigned to SEED proteins by MEGAN5, comparing WS vs. NS pairs. T...
ProbeSeq results as received from the HOMINGS core facility. The first worksheet provides read count...
Complete edgeR results for HOMINGS taxon probes, comparing Plaque vs. NS pairs. Each row summarizes ...
Clinical metadata for subjects. Lists each subjectâs age at time of sampling, gender, the universa...
Heat map of HOMINGS data. The color key is on a logarithmic scale. The Bray-Curtis distance metric w...
relative abundance patterns associated with sucrose-induced dysbiosis are conserved across taxonomic...
Table S2. Relative abundances of species level operational taxonomic units (s-OTUs) in the salivary ...
Figure S1. Number of OTUs, Shannonâs diversity index, and rarefaction curves. Figure S2. PCoA plot...
Supplementary figures for the manuscript. Figure S1. An example of a gel electrophoresis diagram of ...
Table S4. Relative abundances of species level operational taxonomic units (s-OTUs) in the supraging...
Figure S6. Dissimilarity plot based on the relative abundances of the 865 level-4 enzyme commission ...
Figure S3. Species detected ≥ 2.5% relative abundance in kefir samples using each species classifier...
Table S5. Relative abundances of species level operational taxonomic units (s-OTUs) in the subgingiv...
Table S3. Predicted functions in the salivary, supragingival and subgingival microbiomes. Values ar...