Counts for spectra assigned to SEED ontology proteins by MEGAN5. Each row lists spectral counts assigned to a SEED protein. The spreadsheet otherwise is formatted in the same way as Additional file 6
Number of genomes associated to each environment and to each number of environments. (XLSX 5Â kb
Table S5. Relative abundances of species level operational taxonomic units (s-OTUs) in the subgingiv...
Table S5. DESeq normalized RNASeq data representing the Granulicatella adiacens ATCC 49175 genome in...
Complete edgeR results for spectra assigned to SEED proteins by MEGAN5, comparing WS vs. NS pairs. T...
Counts for spectra assigned at the species level by the MEGAN5 LCA. Each row lists spectral counts a...
ProbeSeq results as received from the HOMINGS core facility. The first worksheet provides read count...
Clinical metadata for subjects. Lists each subjectâs age at time of sampling, gender, the universa...
Heat map of HOMINGS data. The color key is on a logarithmic scale. The Bray-Curtis distance metric w...
Complete edgeR results for HOMINGS taxon probes, comparing Plaque vs. NS pairs. Each row summarizes ...
Figure S1. Number of OTUs, Shannonâs diversity index, and rarefaction curves. Figure S2. PCoA plot...
Supplementary figures for the manuscript. Figure S1. An example of a gel electrophoresis diagram of ...
Table S2. Relative abundances of species level operational taxonomic units (s-OTUs) in the salivary ...
Table S9. Relative abundance (RA) and fold changes values representing mRNA reads mapping to bacteri...
Table S3. Predicted functions in the salivary, supragingival and subgingival microbiomes. Values ar...
Table S3. DESeq normalized RNASeq data representing eight different Veillonella genomes in the in vi...
Number of genomes associated to each environment and to each number of environments. (XLSX 5Â kb
Table S5. Relative abundances of species level operational taxonomic units (s-OTUs) in the subgingiv...
Table S5. DESeq normalized RNASeq data representing the Granulicatella adiacens ATCC 49175 genome in...
Complete edgeR results for spectra assigned to SEED proteins by MEGAN5, comparing WS vs. NS pairs. T...
Counts for spectra assigned at the species level by the MEGAN5 LCA. Each row lists spectral counts a...
ProbeSeq results as received from the HOMINGS core facility. The first worksheet provides read count...
Clinical metadata for subjects. Lists each subjectâs age at time of sampling, gender, the universa...
Heat map of HOMINGS data. The color key is on a logarithmic scale. The Bray-Curtis distance metric w...
Complete edgeR results for HOMINGS taxon probes, comparing Plaque vs. NS pairs. Each row summarizes ...
Figure S1. Number of OTUs, Shannonâs diversity index, and rarefaction curves. Figure S2. PCoA plot...
Supplementary figures for the manuscript. Figure S1. An example of a gel electrophoresis diagram of ...
Table S2. Relative abundances of species level operational taxonomic units (s-OTUs) in the salivary ...
Table S9. Relative abundance (RA) and fold changes values representing mRNA reads mapping to bacteri...
Table S3. Predicted functions in the salivary, supragingival and subgingival microbiomes. Values ar...
Table S3. DESeq normalized RNASeq data representing eight different Veillonella genomes in the in vi...
Number of genomes associated to each environment and to each number of environments. (XLSX 5Â kb
Table S5. Relative abundances of species level operational taxonomic units (s-OTUs) in the subgingiv...
Table S5. DESeq normalized RNASeq data representing the Granulicatella adiacens ATCC 49175 genome in...