ProbeSeq results as received from the HOMINGS core facility. The first worksheet provides read count summaries for each sample. The second worksheet lists read counts for all HOMINGS probes (including those not detected) for each sample. The third worksheet presents the read counts as a percent of total reads for each sample, and the fourth worksheet summarizes results for each sample as stacked column plots
Table S1. DESeq normalized RNASeq data representing the Lactobacillus fermentum IFO 3956 genome in t...
Table S8. Read mapping results showing DNA and mRNA read mapping reproducibility between replicate l...
Image of Catch-all⢠swab used for the collection of oral saliva samples. (DOCX 18 kb
Complete edgeR results for HOMINGS taxon probes, comparing Plaque vs. NS pairs. Each row summarizes ...
Heat map of HOMINGS data. The color key is on a logarithmic scale. The Bray-Curtis distance metric w...
Counts for spectra assigned to SEED ontology proteins by MEGAN5. Each row lists spectral counts assi...
Clinical metadata for subjects. Lists each subjectâs age at time of sampling, gender, the universa...
Counts for spectra assigned at the species level by the MEGAN5 LCA. Each row lists spectral counts a...
Complete edgeR results for spectra assigned to SEED proteins by MEGAN5, comparing WS vs. NS pairs. T...
Supplementary figures for the manuscript. Figure S1. An example of a gel electrophoresis diagram of ...
Figure S1. Distribution of key bacterial taxa in the biofilm community obtained by DNA and mRNA deep...
Figure S1. Number of OTUs, Shannonâs diversity index, and rarefaction curves. Figure S2. PCoA plot...
Supplemental Figure S1: Functional shifts in the core salivary microbiome during various dentition s...
Table S2. Per sample total read counts and absolute read counts for each species and genus detected ...
Table S5. DESeq normalized RNASeq data representing the Granulicatella adiacens ATCC 49175 genome in...
Table S1. DESeq normalized RNASeq data representing the Lactobacillus fermentum IFO 3956 genome in t...
Table S8. Read mapping results showing DNA and mRNA read mapping reproducibility between replicate l...
Image of Catch-all⢠swab used for the collection of oral saliva samples. (DOCX 18 kb
Complete edgeR results for HOMINGS taxon probes, comparing Plaque vs. NS pairs. Each row summarizes ...
Heat map of HOMINGS data. The color key is on a logarithmic scale. The Bray-Curtis distance metric w...
Counts for spectra assigned to SEED ontology proteins by MEGAN5. Each row lists spectral counts assi...
Clinical metadata for subjects. Lists each subjectâs age at time of sampling, gender, the universa...
Counts for spectra assigned at the species level by the MEGAN5 LCA. Each row lists spectral counts a...
Complete edgeR results for spectra assigned to SEED proteins by MEGAN5, comparing WS vs. NS pairs. T...
Supplementary figures for the manuscript. Figure S1. An example of a gel electrophoresis diagram of ...
Figure S1. Distribution of key bacterial taxa in the biofilm community obtained by DNA and mRNA deep...
Figure S1. Number of OTUs, Shannonâs diversity index, and rarefaction curves. Figure S2. PCoA plot...
Supplemental Figure S1: Functional shifts in the core salivary microbiome during various dentition s...
Table S2. Per sample total read counts and absolute read counts for each species and genus detected ...
Table S5. DESeq normalized RNASeq data representing the Granulicatella adiacens ATCC 49175 genome in...
Table S1. DESeq normalized RNASeq data representing the Lactobacillus fermentum IFO 3956 genome in t...
Table S8. Read mapping results showing DNA and mRNA read mapping reproducibility between replicate l...
Image of Catch-all⢠swab used for the collection of oral saliva samples. (DOCX 18 kb