Complete edgeR results for spectra assigned to SEED proteins by MEGAN5, comparing WS vs. NS pairs. The proteins names assigned by MEGAN5 were derived from the SEED ontology database. The spreadsheet is formatted in the same way as Additional file 8, except that column H sorts the proteins by the number of microcosms in which they were detected (in descending order)
Figure S1. Distribution of key bacterial taxa in the biofilm community obtained by DNA and mRNA deep...
Additional file 1: Figure S1. (A) Rarefaction curve analysis of archaeal 16S rRNA gene clone librari...
Additional file 2: Figure S1. The correlation analysis between each experimental group and its repli...
Counts for spectra assigned to SEED ontology proteins by MEGAN5. Each row lists spectral counts assi...
Counts for spectra assigned at the species level by the MEGAN5 LCA. Each row lists spectral counts a...
ProbeSeq results as received from the HOMINGS core facility. The first worksheet provides read count...
Complete edgeR results for HOMINGS taxon probes, comparing Plaque vs. NS pairs. Each row summarizes ...
Clinical metadata for subjects. Lists each subjectâs age at time of sampling, gender, the universa...
Heat map of HOMINGS data. The color key is on a logarithmic scale. The Bray-Curtis distance metric w...
relative abundance patterns associated with sucrose-induced dysbiosis are conserved across taxonomic...
<p>The spots showing the same proteins in storage roots of W14, SC205 and SC8, and the number were c...
Novel amylase-binding protein comparison. Includes NCBI protein identifiers, molecular weights, and ...
Table S9. Relative abundance (RA) and fold changes values representing mRNA reads mapping to bacteri...
Table S3. DESeq normalized RNASeq data representing eight different Veillonella genomes in the in vi...
Lists of protein families detected with significantly varying abundance when using different DB type...
Figure S1. Distribution of key bacterial taxa in the biofilm community obtained by DNA and mRNA deep...
Additional file 1: Figure S1. (A) Rarefaction curve analysis of archaeal 16S rRNA gene clone librari...
Additional file 2: Figure S1. The correlation analysis between each experimental group and its repli...
Counts for spectra assigned to SEED ontology proteins by MEGAN5. Each row lists spectral counts assi...
Counts for spectra assigned at the species level by the MEGAN5 LCA. Each row lists spectral counts a...
ProbeSeq results as received from the HOMINGS core facility. The first worksheet provides read count...
Complete edgeR results for HOMINGS taxon probes, comparing Plaque vs. NS pairs. Each row summarizes ...
Clinical metadata for subjects. Lists each subjectâs age at time of sampling, gender, the universa...
Heat map of HOMINGS data. The color key is on a logarithmic scale. The Bray-Curtis distance metric w...
relative abundance patterns associated with sucrose-induced dysbiosis are conserved across taxonomic...
<p>The spots showing the same proteins in storage roots of W14, SC205 and SC8, and the number were c...
Novel amylase-binding protein comparison. Includes NCBI protein identifiers, molecular weights, and ...
Table S9. Relative abundance (RA) and fold changes values representing mRNA reads mapping to bacteri...
Table S3. DESeq normalized RNASeq data representing eight different Veillonella genomes in the in vi...
Lists of protein families detected with significantly varying abundance when using different DB type...
Figure S1. Distribution of key bacterial taxa in the biofilm community obtained by DNA and mRNA deep...
Additional file 1: Figure S1. (A) Rarefaction curve analysis of archaeal 16S rRNA gene clone librari...
Additional file 2: Figure S1. The correlation analysis between each experimental group and its repli...