cancerit/VAGrENT: v3.3.5 - Issue with Admin_GeneRegionBedDumper.pl
- Keiran Raine
- AndyMenzies
- David Jones
Publication date
July 2019
DOIAbstract
Fixing pipefail issue for non-bash environments, splitting command into 2 separate executions
Fixing pipefail issue for non-bash environments, splitting command into 2 separate executions
snakePipes 2.2.1 Fix a bug in DAG for ChIPseq allelic with CSAW. Fixed deepTools qc DAG for ChIPseq...
National Center for Genome Analysis Support (NCGAS) de novo transcriptome assembly pipelin
Many bugfixes have been made, most critically the bug which was adding each read twice for each gene...
What's Changed fix: move SOURCE_CLASS to cli (main branch) by @korikuzma in https://github.com/canc...
Allows use of ensemblgenomes.org as a datasource Handle genes without names, and give more useful er...
Fixed bug where input file paths that didn't exist were ignored Added --seed parameter for pipeline ...
The Cancer Genome Anatomy Project (CGAP) xProfiler and cDNA Digital Gene Expression Displayer (DGED)...
This is a small releasse, fixing issue #111 (Make channel buffert size configurable via environment ...
Added local executor option, and some changes in how to execute the pipeline. Added test.sh script f...
1 zip fileGenes and pathways affected by expression and copy number changes in tumors across project...
Considerable improvement to speed by loading cache file into in memory interval tree. Please review...
3.3.1 samtools and htslib updated to 1.7 Bio::DB::HTS updated to 2.10, fixes error with GRCh38 cont...
Handles species names with spaces modified checks for species, assembly and checksu
snakePipes 2.2.2 Fix DAG inconsistencies for ChIP-seq and ATAC-seq ran fromBAM and from -d. DESeq2 ...
snakePipes 2.2.2 Fix DAG inconsistencies for ChIP-seq and ATAC-seq ran fromBAM and from -d. DESeq2 ...
snakePipes 2.2.1 Fix a bug in DAG for ChIPseq allelic with CSAW. Fixed deepTools qc DAG for ChIPseq...
National Center for Genome Analysis Support (NCGAS) de novo transcriptome assembly pipelin
Many bugfixes have been made, most critically the bug which was adding each read twice for each gene...
What's Changed fix: move SOURCE_CLASS to cli (main branch) by @korikuzma in https://github.com/canc...
Allows use of ensemblgenomes.org as a datasource Handle genes without names, and give more useful er...
Fixed bug where input file paths that didn't exist were ignored Added --seed parameter for pipeline ...
The Cancer Genome Anatomy Project (CGAP) xProfiler and cDNA Digital Gene Expression Displayer (DGED)...
This is a small releasse, fixing issue #111 (Make channel buffert size configurable via environment ...
Added local executor option, and some changes in how to execute the pipeline. Added test.sh script f...
1 zip fileGenes and pathways affected by expression and copy number changes in tumors across project...
Considerable improvement to speed by loading cache file into in memory interval tree. Please review...
3.3.1 samtools and htslib updated to 1.7 Bio::DB::HTS updated to 2.10, fixes error with GRCh38 cont...
Handles species names with spaces modified checks for species, assembly and checksu
snakePipes 2.2.2 Fix DAG inconsistencies for ChIP-seq and ATAC-seq ran fromBAM and from -d. DESeq2 ...
snakePipes 2.2.2 Fix DAG inconsistencies for ChIP-seq and ATAC-seq ran fromBAM and from -d. DESeq2 ...
snakePipes 2.2.1 Fix a bug in DAG for ChIPseq allelic with CSAW. Fixed deepTools qc DAG for ChIPseq...
National Center for Genome Analysis Support (NCGAS) de novo transcriptome assembly pipelin
Many bugfixes have been made, most critically the bug which was adding each read twice for each gene...
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