Publication date
June 2022
DOIAbstract
Added local executor option, and some changes in how to execute the pipeline. Added test.sh script for testing the pipeline, as of issue #24
Added local executor option, and some changes in how to execute the pipeline. Added test.sh script for testing the pipeline, as of issue #24
Added several tests, increased code coverage, updated dependencies. See also NEWS.md
The existing Version 1 of the Parallelism TS exposes parallel execution to the programmer in the for...
Features Add Executor class and CLI arguments for parallelism @bouthilx (#608) Orion python api in ...
This is the first complete version of the ALPPACA pipeline. Changes include the addition of an html...
Minor updates to increase speed of pipeline and the addition of snp-filtering with snp-sites
Major update following the JOSS review of ALPPACA. The pipeline has been changed to partially reflec...
Fixed bug where input file paths that didn't exist were ignored Added --seed parameter for pipeline ...
This version adds the cgMLST track to the pipeline! Run the track with --track cgmlst, check the Wik...
[0.44.0] - 2022-03-31 Added A version check is done at Covalent startup to ensure that executor plu...
[0.27.4] - 2022-02-28 Fixed Path used in covalent/executor/__init__.py for executor plugin modules ...
Added new features and improved stability, reliability, ease of installation, and user feedback. Ad...
“Greg Kroah-Hartman has gotten [Linux] 2.6.13 off to a good start with a massive set of driver core ...
This is an official release of the CLIA Licensed Environment (CLE) IDT Exome and AML Trio assay work...
2022 v2 release. Main changes are update on how conda is used update of all command lines multiqc r...
Fixing pipefail issue for non-bash environments, splitting command into 2 separate executions
Added several tests, increased code coverage, updated dependencies. See also NEWS.md
The existing Version 1 of the Parallelism TS exposes parallel execution to the programmer in the for...
Features Add Executor class and CLI arguments for parallelism @bouthilx (#608) Orion python api in ...
This is the first complete version of the ALPPACA pipeline. Changes include the addition of an html...
Minor updates to increase speed of pipeline and the addition of snp-filtering with snp-sites
Major update following the JOSS review of ALPPACA. The pipeline has been changed to partially reflec...
Fixed bug where input file paths that didn't exist were ignored Added --seed parameter for pipeline ...
This version adds the cgMLST track to the pipeline! Run the track with --track cgmlst, check the Wik...
[0.44.0] - 2022-03-31 Added A version check is done at Covalent startup to ensure that executor plu...
[0.27.4] - 2022-02-28 Fixed Path used in covalent/executor/__init__.py for executor plugin modules ...
Added new features and improved stability, reliability, ease of installation, and user feedback. Ad...
“Greg Kroah-Hartman has gotten [Linux] 2.6.13 off to a good start with a massive set of driver core ...
This is an official release of the CLIA Licensed Environment (CLE) IDT Exome and AML Trio assay work...
2022 v2 release. Main changes are update on how conda is used update of all command lines multiqc r...
Fixing pipefail issue for non-bash environments, splitting command into 2 separate executions
Added several tests, increased code coverage, updated dependencies. See also NEWS.md
The existing Version 1 of the Parallelism TS exposes parallel execution to the programmer in the for...
Features Add Executor class and CLI arguments for parallelism @bouthilx (#608) Orion python api in ...
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