Publication date
January 2021
DOIAbstract
Minor updates to increase speed of pipeline and the addition of snp-filtering with snp-sites
Minor updates to increase speed of pipeline and the addition of snp-filtering with snp-sites
Sargasso can now disambiguate RNA-seq reads created from mixtures of more than two species. Speed im...
This release generates a stable DOI for accessing all of the data necessary to recreate analyses doc...
What's Changed Improved SNOwGLoBES integration. Data files for detectors are included when installi...
This is the first complete version of the ALPPACA pipeline. Changes include the addition of an html...
Added local executor option, and some changes in how to execute the pipeline. Added test.sh script f...
Major update following the JOSS review of ALPPACA. The pipeline has been changed to partially reflec...
This version adds the cgMLST track to the pipeline! Run the track with --track cgmlst, check the Wik...
Fixed bug where input file paths that didn't exist were ignored Added --seed parameter for pipeline ...
2022 v2 release. Main changes are update on how conda is used update of all command lines multiqc r...
This release includes bug fixes to make multiple functions more stable, ensuring that issues are cau...
pyOptSparse v2.3.0 release notes This release adds support for SNOPT v7.7.5 (#185), including two ne...
An update of miRNASNP database for better SNP selection by GWAS data, miRNA expression and online to...
This release corresponds to the updated documentation and functionalities requested by reviewers of ...
This is a bug fix release. The specific gene finding module was not working properly. This version f...
The pipeline bacannot, is a customisable, easy to use, pipeline that uses state-of-the-art software ...
Sargasso can now disambiguate RNA-seq reads created from mixtures of more than two species. Speed im...
This release generates a stable DOI for accessing all of the data necessary to recreate analyses doc...
What's Changed Improved SNOwGLoBES integration. Data files for detectors are included when installi...
This is the first complete version of the ALPPACA pipeline. Changes include the addition of an html...
Added local executor option, and some changes in how to execute the pipeline. Added test.sh script f...
Major update following the JOSS review of ALPPACA. The pipeline has been changed to partially reflec...
This version adds the cgMLST track to the pipeline! Run the track with --track cgmlst, check the Wik...
Fixed bug where input file paths that didn't exist were ignored Added --seed parameter for pipeline ...
2022 v2 release. Main changes are update on how conda is used update of all command lines multiqc r...
This release includes bug fixes to make multiple functions more stable, ensuring that issues are cau...
pyOptSparse v2.3.0 release notes This release adds support for SNOPT v7.7.5 (#185), including two ne...
An update of miRNASNP database for better SNP selection by GWAS data, miRNA expression and online to...
This release corresponds to the updated documentation and functionalities requested by reviewers of ...
This is a bug fix release. The specific gene finding module was not working properly. This version f...
The pipeline bacannot, is a customisable, easy to use, pipeline that uses state-of-the-art software ...
Sargasso can now disambiguate RNA-seq reads created from mixtures of more than two species. Speed im...
This release generates a stable DOI for accessing all of the data necessary to recreate analyses doc...
What's Changed Improved SNOwGLoBES integration. Data files for detectors are included when installi...
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