Publication date
August 2019
DOIAbstract
Considerable improvement to speed by loading cache file into in memory interval tree. Please review command line args for new parameters
Considerable improvement to speed by loading cache file into in memory interval tree. Please review command line args for new parameters
A review of cancer registry data in response to concerns about a possible excess of cancer associate...
Added module and executable to validate sample meta data and bam headers. It's mainly for the use of...
Now possible to use AnnotateVcf.pl on a simple tsv file. There must be entries for the 11 columns (h...
This release contains a complete replacement for the cache file generation code. Should make it fun...
Primarily fixes various issues relating to sorting. Specific issues addressed: #22 #2
Handles species names with spaces modified checks for species, assembly and checksu
Fix in underlying pindel algorithm to allow complex events with inserted sequence longer than the de...
3.0.1 Update tabix calls to directly use query_full (solves GRCh38 contig name issues)
Fixes to ensure content of info fields is stable between runs, not just the order of vcf records. Se...
Generation of the counts files can now be on a per-sample process, separated from the full ascat.pl ...
Allows use of ensemblgenomes.org as a datasource Handle genes without names, and give more useful er...
“The original publication is available at www.springerlink.com” Copyright Springer [Full text of thi...
Contains fulltext : 49906.pdf (publisher's version ) (Open Access)[18F]Fluorodeoxy...
To process 40 million readpairs (40x Tumour + 40x Normal, chr21, 100bp reads): Original time: User t...
What's Changed fix: return all locations in response (#126, #152) by @korikuzma in https://github.c...
A review of cancer registry data in response to concerns about a possible excess of cancer associate...
Added module and executable to validate sample meta data and bam headers. It's mainly for the use of...
Now possible to use AnnotateVcf.pl on a simple tsv file. There must be entries for the 11 columns (h...
This release contains a complete replacement for the cache file generation code. Should make it fun...
Primarily fixes various issues relating to sorting. Specific issues addressed: #22 #2
Handles species names with spaces modified checks for species, assembly and checksu
Fix in underlying pindel algorithm to allow complex events with inserted sequence longer than the de...
3.0.1 Update tabix calls to directly use query_full (solves GRCh38 contig name issues)
Fixes to ensure content of info fields is stable between runs, not just the order of vcf records. Se...
Generation of the counts files can now be on a per-sample process, separated from the full ascat.pl ...
Allows use of ensemblgenomes.org as a datasource Handle genes without names, and give more useful er...
“The original publication is available at www.springerlink.com” Copyright Springer [Full text of thi...
Contains fulltext : 49906.pdf (publisher's version ) (Open Access)[18F]Fluorodeoxy...
To process 40 million readpairs (40x Tumour + 40x Normal, chr21, 100bp reads): Original time: User t...
What's Changed fix: return all locations in response (#126, #152) by @korikuzma in https://github.c...
A review of cancer registry data in response to concerns about a possible excess of cancer associate...
Added module and executable to validate sample meta data and bam headers. It's mainly for the use of...
Now possible to use AnnotateVcf.pl on a simple tsv file. There must be entries for the 11 columns (h...
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