NCGAS/de-novo-transcriptome-assembly-pipeline: Generating a DOI
- Sanders, Sheri
- Papudeshi, Bhavya
- Ganote, Carrie
Publication date
July 2020
DOIAbstract
National Center for Genome Analysis Support (NCGAS) de novo transcriptome assembly pipelin
National Center for Genome Analysis Support (NCGAS) de novo transcriptome assembly pipelin
Advent of Next Generation Sequencing has led to possibilities of de novo transcriptome assembly of o...
Bacterial genomes and scaffolds downloaded from the NCBI GenBank assembly database (part 1/4)
Neshat A. Transcriptome analysis of industrially relevant bacteria by next-generation sequencing. Bi...
Flowchart describing the de novo genome assembly pipeline used in the present study.</p
<p>This pipeline has four key steps: (1) Sampling the suitable tissues. Target genes must be relativ...
This is the working directory for data used in a de novo genome assembly tutorial: https://astrobiom...
Assemblies for transcriptomes generated by this study and sra files downloaded from NCB
Reference transcriptome reconstructed from de novo assembly produced with program Trinity by merging...
Statistical summary of de novo transcriptome assemblies for three assembly programs.</p
<p><em>de novo</em> transcriptomes assembled with a range of <em>k</em>- mers</p
De novo antennular transcriptome assembly and annotation statistics, nt = nucleotides.</p
This is a gzip/tar compressed data archive containing the draft contig de-novo assemblies generated ...
<p>Transcriptome <i>De novo</i> assembly statistics obtained from Velvet and Oases assembly.</p
Reconstruction of transcriptome by de novo assembly from next generation sequencing (NGS) short-sequ...
Completeness assessment of transcriptome assemblies by CEGMA and BUSCO referring to CVG. (PDF 468Â k...
Advent of Next Generation Sequencing has led to possibilities of de novo transcriptome assembly of o...
Bacterial genomes and scaffolds downloaded from the NCBI GenBank assembly database (part 1/4)
Neshat A. Transcriptome analysis of industrially relevant bacteria by next-generation sequencing. Bi...
Flowchart describing the de novo genome assembly pipeline used in the present study.</p
<p>This pipeline has four key steps: (1) Sampling the suitable tissues. Target genes must be relativ...
This is the working directory for data used in a de novo genome assembly tutorial: https://astrobiom...
Assemblies for transcriptomes generated by this study and sra files downloaded from NCB
Reference transcriptome reconstructed from de novo assembly produced with program Trinity by merging...
Statistical summary of de novo transcriptome assemblies for three assembly programs.</p
<p><em>de novo</em> transcriptomes assembled with a range of <em>k</em>- mers</p
De novo antennular transcriptome assembly and annotation statistics, nt = nucleotides.</p
This is a gzip/tar compressed data archive containing the draft contig de-novo assemblies generated ...
<p>Transcriptome <i>De novo</i> assembly statistics obtained from Velvet and Oases assembly.</p
Reconstruction of transcriptome by de novo assembly from next generation sequencing (NGS) short-sequ...
Completeness assessment of transcriptome assemblies by CEGMA and BUSCO referring to CVG. (PDF 468Â k...
Advent of Next Generation Sequencing has led to possibilities of de novo transcriptome assembly of o...
Bacterial genomes and scaffolds downloaded from the NCBI GenBank assembly database (part 1/4)
Neshat A. Transcriptome analysis of industrially relevant bacteria by next-generation sequencing. Bi...
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