Publication date
May 2019
DOIAbstract
now generates a partitions file compatible with tree programs capable of using mixed model
now generates a partitions file compatible with tree programs capable of using mixed model
Added in "conservative mode", minor bug fixes Codebase: https://github.com/AstrobioMike/GToTree Do...
updated gtt-genbank-to-AA-seqs to handle those without locus_tags improved gtt-gen-iToL-ma
small fix to handle mapping file -m properly when user provides paths to input files in first column...
initial addition of iqtree, basic use right now (not yet doing partial models automatically) Codeba...
Initial release of GToTree! Codebase: https://github.com/AstrobioMike/GToTree Documentation: https:/...
update to gtdb version file download to coincide with their switch from "VERSION" to "VERSION.txt" (...
added comprehensive helper program gtt-get-accessions-from-GTDB to facilitate accessing and utilizin...
update to gtdb version file download (handled by helper program gtt-check-or-setup-GTDB-files) to co...
added gtt-gen-SCG-HMMs to be able to generate new SCG-sets the same way those packaged with GToTree ...
better checking and error message improvement when input accessions file format has problems, and wh...
fixing version disparity because i can never remember to update it with changes before release – i k...
minor bug fixes; additional output report added Codebase: https://github.com/AstrobioMike/GToTree ...
minor bug fixes Codebase: https://github.com/AstrobioMike/GToTree Documentation: https://github.co...
adding gtt-update-ncbi-taxonomy helper script to be able to easily keep the db up-to-date for use wi...
fixing a bug where output file final names might be odd if output directory wasn't in current workin...
Added in "conservative mode", minor bug fixes Codebase: https://github.com/AstrobioMike/GToTree Do...
updated gtt-genbank-to-AA-seqs to handle those without locus_tags improved gtt-gen-iToL-ma
small fix to handle mapping file -m properly when user provides paths to input files in first column...
initial addition of iqtree, basic use right now (not yet doing partial models automatically) Codeba...
Initial release of GToTree! Codebase: https://github.com/AstrobioMike/GToTree Documentation: https:/...
update to gtdb version file download to coincide with their switch from "VERSION" to "VERSION.txt" (...
added comprehensive helper program gtt-get-accessions-from-GTDB to facilitate accessing and utilizin...
update to gtdb version file download (handled by helper program gtt-check-or-setup-GTDB-files) to co...
added gtt-gen-SCG-HMMs to be able to generate new SCG-sets the same way those packaged with GToTree ...
better checking and error message improvement when input accessions file format has problems, and wh...
fixing version disparity because i can never remember to update it with changes before release – i k...
minor bug fixes; additional output report added Codebase: https://github.com/AstrobioMike/GToTree ...
minor bug fixes Codebase: https://github.com/AstrobioMike/GToTree Documentation: https://github.co...
adding gtt-update-ncbi-taxonomy helper script to be able to easily keep the db up-to-date for use wi...
fixing a bug where output file final names might be odd if output directory wasn't in current workin...
Added in "conservative mode", minor bug fixes Codebase: https://github.com/AstrobioMike/GToTree Do...
updated gtt-genbank-to-AA-seqs to handle those without locus_tags improved gtt-gen-iToL-ma
small fix to handle mapping file -m properly when user provides paths to input files in first column...
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