a. Diets within fecal sample type, b. Diets within rumen liquor sample type, c. Fecal and rumen liquor sample types. The cladogram illustrates the presence of microbial phyla and genera that are significantly different based on linear discriminant analysis (LDA) scores in the histogram. The LDA score at log 10 > 4 is set as threshold and the length of each bin, i.e., LDA score represents the extent to which the microbial taxa differ among the groups.</p
<p>(A) Taxonomic representation of statistically and biologically consistent differences between hea...
Green = winter (n = 34), red = summer (n = 83). Samples were obtained from 46 and 39 farms in 2015 a...
<p>A) PCoA of the unweighted UniFrac distances of microbial 16S rRNA sequences, B) Taxonomic richnes...
(A) Differences in abundance of taxonomic groups among all three sample. LDA cutoff = 2. Differentia...
Phylogenetic relationships among significant bacterial biomarkers are indicated in the cladogram (to...
<p>Taxa with relative abundance ≥ 0.1% present in at least one sample in each location were included...
<p>(A) Taxonomic representation of statistically and biologically consistent differences between can...
(A) Cladogram representing statistically significant differences in bacterial clades among the three...
Genera with an LDA score >4.0 (p<0.01) are depicted, based on their scores. Prefixes of the bacteria...
Significant (red and green) and non-significant (yellow) discriminant taxonomic nodes are colored. C...
(A) Results of the LEfSe analysis comparing vendors. FDR-adjusted p-value <0.05; the LDA log score i...
This figure shows the bacterial groups that were different in abundance between the high-fat (HF) an...
<p>A bar plot showing the LDA score (effect size) of the oligotypes that were differentially abundan...
<p>(a) Taxonomic cladogram obtained using LEfSe analysis of the 16S rRNA sequences. Treatment groups...
(A) Taxonomic representation of statistically and biologically consistent differences in CRA and hea...
<p>(A) Taxonomic representation of statistically and biologically consistent differences between hea...
Green = winter (n = 34), red = summer (n = 83). Samples were obtained from 46 and 39 farms in 2015 a...
<p>A) PCoA of the unweighted UniFrac distances of microbial 16S rRNA sequences, B) Taxonomic richnes...
(A) Differences in abundance of taxonomic groups among all three sample. LDA cutoff = 2. Differentia...
Phylogenetic relationships among significant bacterial biomarkers are indicated in the cladogram (to...
<p>Taxa with relative abundance ≥ 0.1% present in at least one sample in each location were included...
<p>(A) Taxonomic representation of statistically and biologically consistent differences between can...
(A) Cladogram representing statistically significant differences in bacterial clades among the three...
Genera with an LDA score >4.0 (p<0.01) are depicted, based on their scores. Prefixes of the bacteria...
Significant (red and green) and non-significant (yellow) discriminant taxonomic nodes are colored. C...
(A) Results of the LEfSe analysis comparing vendors. FDR-adjusted p-value <0.05; the LDA log score i...
This figure shows the bacterial groups that were different in abundance between the high-fat (HF) an...
<p>A bar plot showing the LDA score (effect size) of the oligotypes that were differentially abundan...
<p>(a) Taxonomic cladogram obtained using LEfSe analysis of the 16S rRNA sequences. Treatment groups...
(A) Taxonomic representation of statistically and biologically consistent differences in CRA and hea...
<p>(A) Taxonomic representation of statistically and biologically consistent differences between hea...
Green = winter (n = 34), red = summer (n = 83). Samples were obtained from 46 and 39 farms in 2015 a...
<p>A) PCoA of the unweighted UniFrac distances of microbial 16S rRNA sequences, B) Taxonomic richnes...