Linear discriminant analysis effect size (LEfSe) indicating differentially enriched fecal bacterial communities (with LDA score >3) at the genus level of adult females by season (n = 117).

Differentially abundant bacterial taxa in fecal samples from dogs with tumors and control dogs.

Kristin Marie Valand Herstad (5324690)
Aina Elisabeth Fossum Moen (5324693)
John Christian Gaby (148535)
Lars Moe (279381)
Ellen Skancke (3429347)

May 2018

A bar plot showing the LDA score (effect size) of the oligotypes that were differentially abundan...

Differences in fecal microbiomes for the first week of calf life and for calves that suffered or not from diarrhea, derived from the discriminant analysis that used bacterial genus prevalences as covariates and diarrhea incidence as the categorical variable.

Georgios Oikonomou (126552)
Andre Gustavo Vieira Teixeira (408565)
Carla Foditsch (408566)
Marcela Lucas Bicalho (408567)
Vinicius Silva Machado (126556)
Rodrigo Carvalho Bicalho (126564)

April 2013

Differences in fecal microbiomes for the first week of calf life and for calves that suffered or ...

Comparison of microbiota differences by ethnic group, analyzed by LEfSe using baseline samples.

Guillermo I. Perez Perez (2614510)
Zhan Gao (271239)
Roland Jourdain (386066)
Julia Ramirez (2614513)
Francesca Gany (2614516)
Cecile Clavaud (2614507)
Julien Demaude (301507)
Lionel Breton (172177)
Martin J. Blaser (264336)

April 2016

Taxa with relative abundance ≥ 0.1% present in at least one sample in each location were included...

Cladograms and histograms illustrating significantly different microbial taxa in LEfSe analysis.

Felix M. Kibegwa (14425216)
Rawlynce C. Bett (14425219)
Charles K. Gachuiri (14425222)
Eunice Machuka (8950103)
Francesca Stomeo (679105)
Fidalis D. Mujibi (7059782)

January 2023

a. Diets within fecal sample type, b. Diets within rumen liquor sample type, c. Fecal and rumen liqu...

LEfSe analysis identification of biomarker microbes for endophytic bacterial communities for different months of sample collection.

Tao Ding (129078)
Ulrich Melcher (27871)

March 2016

LEfSe analysis identification of biomarker microbes for endophytic bacterial communities for diff...

Comparison of LDA effect size of the significantly differentiating microbial taxa deduced using LefSe analysis.

Ilze Elbere (3584057)
Ineta Kalnina (5797688)
Ivars Silamikelis (3584054)
Ilze Konrade (5797691)
Linda Zaharenko (5797694)
Kristine Sekace (5797697)
Ilze Radovica-Spalvina (3584045)
Davids Fridmanis (412211)
Dita Gudra (4439767)
Valdis Pirags (5797700)
Janis Klovins (76934)

September 2018

(A) Differences in abundance of taxonomic groups among all three sample. LDA cutoff = 2. Differentia...

Results of the LEfSe analysis show significantly discriminative genera among the five sample groups.

Kazunori Murase (3505964)
Takayasu Watanabe (221877)
Sakura Arai (3151350)
Hyunjung Kim (135950)
Mari Tohya (3151347)
Kasumi Ishida-Kuroki (6631637)
Tấn Hùng Võ (6631640)
Thị Phương Bình Nguyễn (6631643)
Ichiro Nakagawa (189496)
Ro Osawa (345943)
Ngọc Hải Nguyễn (6631646)
Tsutomu Sekizaki (255160)

April 2019

Genera with an LDA score >4.0 (p<0.01) are depicted, based on their scores. Prefixes of the bacteria...

Bacterial characteristics among the fecal microbiome of vendors.

Yuko Shigeno (13531546)
Hong Liu (50694)
Chie Sano (10265558)
Ryo Inoue (546868)
Kimie Niimi (309121)
Kentaro Nagaoka (418207)

August 2022

(A) Results of the LEfSe analysis comparing vendors. FDR-adjusted p-value <0.05; the LDA log score i...

Discriminant analysis of fecal microbiomes by week of life.

Georgios Oikonomou (126552)
Andre Gustavo Vieira Teixeira (408565)
Carla Foditsch (408566)
Marcela Lucas Bicalho (408567)
Vinicius Silva Machado (126556)
Rodrigo Carvalho Bicalho (126564)

April 2013

The microbial transition from week one (blue circle) until week seven (red circle) is illustrated...

Linear discriminant analysis (LDA) effect size taxonomic cladogram highlighting the microbial biomarkers that statistically and biologically differentiate between the two BTFs.

Rongfang Feng (745418)
Gang Zhao (161405)
Yonggang Yang (441472)
Meiying Xu (186371)
Shaobin Huang (532247)
Guoping Sun (137449)
Jun Guo (85069)
Jianjun Li (139837)

May 2019

Significant (red and green) and non-significant (yellow) discriminant taxonomic nodes are colored. C...

Bacterial taxa in H or L groups by LEfSe analysis.

Yuqin Wu (2833943)
Jianhui Li (361790)
Xin Qin (1367004)
Shiqiang Sun (5900273)
Zhibin Xiao (5278337)
Xiaoyu Dong (734222)
Muhammad Suhaib Shahid (5900276)
Dafei Yin (2824400)
Jianmin Yuan (386784)

October 2018

Phylogenetic relationships among significant bacterial biomarkers are indicated in the cladogram (to...

Linear discriminant analysis (LDA) effect size (LEfSe) showing differentially abundant bacterial taxa between pregnancy day 42 and 7 weeks postpartum.

Åsa Vilson (5003333)
Ziad Ramadan (2324950)
Qinghong Li (5003339)
Åke Hedhammar (157748)
Arleigh Reynolds (577247)
Julie Spears (577246)
Jeff Labuda (5003330)
Robyn Pelker (5003342)
Bengt Björkstén (5003336)
Johan Dicksved (261556)
Helene Hansson-Hamlin (621155)

March 2018

Taxonomic groups significantly enriched at pregnancy day 42 is shown in green and the taxa enrich...

Linear discriminant analysis (LDA) effect size (LEfSe) showing differentially abundant bacterial taxa between 7 weeks and 15–18 months old dogs.

Åsa Vilson (5003333)
Ziad Ramadan (2324950)
Qinghong Li (5003339)
Åke Hedhammar (157748)
Arleigh Reynolds (577247)
Julie Spears (577246)
Jeff Labuda (5003330)
Robyn Pelker (5003342)
Bengt Björkstén (5003336)
Johan Dicksved (261556)
Helene Hansson-Hamlin (621155)

March 2018

Taxonomic groups significantly enriched in 7 weeks old puppies are indicated with green whereas t...

LEfSe distinguishes difference in relative abundance of bacterial families in diarrheic samples at Day 7.

Ubaldo De La Torre (6650927)
John D. Henderson (6650930)
Kathleen L. Furtado (6650933)
Madeleine Pedroja (6650936)
O’Malley Elenamarie (6650939)
Anthony Mora (6650942)
Monica Y. Pechanec (6650945)
Elizabeth A. Maga (389127)
Michael J. Mienaltowski (475387)

April 2019

(A) Significant differences in microbial populations were examined for Day 7 diarrhea samples versus...

LEfSe distinguishes which bacterial populations are relatively abundant between healthy samples at Farm A and Farm B at different time points.

Ubaldo De La Torre (6650927)
John D. Henderson (6650930)
Kathleen L. Furtado (6650933)
Madeleine Pedroja (6650936)
O’Malley Elenamarie (6650939)
Anthony Mora (6650942)
Monica Y. Pechanec (6650945)
Elizabeth A. Maga (389127)
Michael J. Mienaltowski (475387)

April 2019

Specifically, we examined (A) Day 7, (B) Day 28, (C) Day 60, and (D) mare samples at Day 1. Signific...

Differentially abundant bacterial taxa in fecal samples from dogs with tumors and control dogs.

Kristin Marie Valand Herstad (5324690)
Aina Elisabeth Fossum Moen (5324693)
John Christian Gaby (148535)
Lars Moe (279381)
Ellen Skancke (3429347)

May 2018

A bar plot showing the LDA score (effect size) of the oligotypes that were differentially abundan...

Differences in fecal microbiomes for the first week of calf life and for calves that suffered or not from diarrhea, derived from the discriminant analysis that used bacterial genus prevalences as covariates and diarrhea incidence as the categorical variable.

Georgios Oikonomou (126552)
Andre Gustavo Vieira Teixeira (408565)
Carla Foditsch (408566)
Marcela Lucas Bicalho (408567)
Vinicius Silva Machado (126556)
Rodrigo Carvalho Bicalho (126564)

April 2013

Differences in fecal microbiomes for the first week of calf life and for calves that suffered or ...

Comparison of microbiota differences by ethnic group, analyzed by LEfSe using baseline samples.

Guillermo I. Perez Perez (2614510)
Zhan Gao (271239)
Roland Jourdain (386066)
Julia Ramirez (2614513)
Francesca Gany (2614516)
Cecile Clavaud (2614507)
Julien Demaude (301507)
Lionel Breton (172177)
Martin J. Blaser (264336)

April 2016

Taxa with relative abundance ≥ 0.1% present in at least one sample in each location were included...

Cladograms and histograms illustrating significantly different microbial taxa in LEfSe analysis.

Felix M. Kibegwa (14425216)
Rawlynce C. Bett (14425219)
Charles K. Gachuiri (14425222)
Eunice Machuka (8950103)
Francesca Stomeo (679105)
Fidalis D. Mujibi (7059782)

January 2023

a. Diets within fecal sample type, b. Diets within rumen liquor sample type, c. Fecal and rumen liqu...

LEfSe analysis identification of biomarker microbes for endophytic bacterial communities for different months of sample collection.

Tao Ding (129078)
Ulrich Melcher (27871)

March 2016

LEfSe analysis identification of biomarker microbes for endophytic bacterial communities for diff...

Comparison of LDA effect size of the significantly differentiating microbial taxa deduced using LefSe analysis.

Ilze Elbere (3584057)
Ineta Kalnina (5797688)
Ivars Silamikelis (3584054)
Ilze Konrade (5797691)
Linda Zaharenko (5797694)
Kristine Sekace (5797697)
Ilze Radovica-Spalvina (3584045)
Davids Fridmanis (412211)
Dita Gudra (4439767)
Valdis Pirags (5797700)
Janis Klovins (76934)

September 2018

(A) Differences in abundance of taxonomic groups among all three sample. LDA cutoff = 2. Differentia...

Results of the LEfSe analysis show significantly discriminative genera among the five sample groups.

Kazunori Murase (3505964)
Takayasu Watanabe (221877)
Sakura Arai (3151350)
Hyunjung Kim (135950)
Mari Tohya (3151347)
Kasumi Ishida-Kuroki (6631637)
Tấn Hùng Võ (6631640)
Thị Phương Bình Nguyễn (6631643)
Ichiro Nakagawa (189496)
Ro Osawa (345943)
Ngọc Hải Nguyễn (6631646)
Tsutomu Sekizaki (255160)

April 2019

Genera with an LDA score >4.0 (p<0.01) are depicted, based on their scores. Prefixes of the bacteria...

Bacterial characteristics among the fecal microbiome of vendors.

Yuko Shigeno (13531546)
Hong Liu (50694)
Chie Sano (10265558)
Ryo Inoue (546868)
Kimie Niimi (309121)
Kentaro Nagaoka (418207)

August 2022

(A) Results of the LEfSe analysis comparing vendors. FDR-adjusted p-value <0.05; the LDA log score i...

Discriminant analysis of fecal microbiomes by week of life.

Georgios Oikonomou (126552)
Andre Gustavo Vieira Teixeira (408565)
Carla Foditsch (408566)
Marcela Lucas Bicalho (408567)
Vinicius Silva Machado (126556)
Rodrigo Carvalho Bicalho (126564)

April 2013

The microbial transition from week one (blue circle) until week seven (red circle) is illustrated...

Linear discriminant analysis (LDA) effect size taxonomic cladogram highlighting the microbial biomarkers that statistically and biologically differentiate between the two BTFs.

Rongfang Feng (745418)
Gang Zhao (161405)
Yonggang Yang (441472)
Meiying Xu (186371)
Shaobin Huang (532247)
Guoping Sun (137449)
Jun Guo (85069)
Jianjun Li (139837)

May 2019

Significant (red and green) and non-significant (yellow) discriminant taxonomic nodes are colored. C...

Bacterial taxa in H or L groups by LEfSe analysis.

Yuqin Wu (2833943)
Jianhui Li (361790)
Xin Qin (1367004)
Shiqiang Sun (5900273)
Zhibin Xiao (5278337)
Xiaoyu Dong (734222)
Muhammad Suhaib Shahid (5900276)
Dafei Yin (2824400)
Jianmin Yuan (386784)

October 2018

Phylogenetic relationships among significant bacterial biomarkers are indicated in the cladogram (to...

Linear discriminant analysis (LDA) effect size (LEfSe) showing differentially abundant bacterial taxa between pregnancy day 42 and 7 weeks postpartum.

Åsa Vilson (5003333)
Ziad Ramadan (2324950)
Qinghong Li (5003339)
Åke Hedhammar (157748)
Arleigh Reynolds (577247)
Julie Spears (577246)
Jeff Labuda (5003330)
Robyn Pelker (5003342)
Bengt Björkstén (5003336)
Johan Dicksved (261556)
Helene Hansson-Hamlin (621155)

March 2018

Taxonomic groups significantly enriched at pregnancy day 42 is shown in green and the taxa enrich...

Linear discriminant analysis (LDA) effect size (LEfSe) showing differentially abundant bacterial taxa between 7 weeks and 15–18 months old dogs.

Åsa Vilson (5003333)
Ziad Ramadan (2324950)
Qinghong Li (5003339)
Åke Hedhammar (157748)
Arleigh Reynolds (577247)
Julie Spears (577246)
Jeff Labuda (5003330)
Robyn Pelker (5003342)
Bengt Björkstén (5003336)
Johan Dicksved (261556)
Helene Hansson-Hamlin (621155)

March 2018

Taxonomic groups significantly enriched in 7 weeks old puppies are indicated with green whereas t...

LEfSe distinguishes difference in relative abundance of bacterial families in diarrheic samples at Day 7.

Ubaldo De La Torre (6650927)
John D. Henderson (6650930)
Kathleen L. Furtado (6650933)
Madeleine Pedroja (6650936)
O’Malley Elenamarie (6650939)
Anthony Mora (6650942)
Monica Y. Pechanec (6650945)
Elizabeth A. Maga (389127)
Michael J. Mienaltowski (475387)

April 2019

(A) Significant differences in microbial populations were examined for Day 7 diarrhea samples versus...

LEfSe distinguishes which bacterial populations are relatively abundant between healthy samples at Farm A and Farm B at different time points.

Ubaldo De La Torre (6650927)
John D. Henderson (6650930)
Kathleen L. Furtado (6650933)
Madeleine Pedroja (6650936)
O’Malley Elenamarie (6650939)
Anthony Mora (6650942)
Monica Y. Pechanec (6650945)
Elizabeth A. Maga (389127)
Michael J. Mienaltowski (475387)

April 2019

Specifically, we examined (A) Day 7, (B) Day 28, (C) Day 60, and (D) mare samples at Day 1. Signific...

Differentially abundant bacterial taxa in fecal samples from dogs with tumors and control dogs.

Kristin Marie Valand Herstad (5324690)
Aina Elisabeth Fossum Moen (5324693)
John Christian Gaby (148535)
Lars Moe (279381)
Ellen Skancke (3429347)

May 2018

A bar plot showing the LDA score (effect size) of the oligotypes that were differentially abundan...

Differences in fecal microbiomes for the first week of calf life and for calves that suffered or not from diarrhea, derived from the discriminant analysis that used bacterial genus prevalences as covariates and diarrhea incidence as the categorical variable.

Georgios Oikonomou (126552)
Andre Gustavo Vieira Teixeira (408565)
Carla Foditsch (408566)
Marcela Lucas Bicalho (408567)
Vinicius Silva Machado (126556)
Rodrigo Carvalho Bicalho (126564)

April 2013

Differences in fecal microbiomes for the first week of calf life and for calves that suffered or ...

Comparison of microbiota differences by ethnic group, analyzed by LEfSe using baseline samples.

Guillermo I. Perez Perez (2614510)
Zhan Gao (271239)
Roland Jourdain (386066)
Julia Ramirez (2614513)
Francesca Gany (2614516)
Cecile Clavaud (2614507)
Julien Demaude (301507)
Lionel Breton (172177)
Martin J. Blaser (264336)

April 2016

Taxa with relative abundance ≥ 0.1% present in at least one sample in each location were included...

Linear discriminant analysis effect size (LEfSe) indicating differentially enriched fecal bacterial communities (with LDA score >3) at the genus level of adult females by season (n = 117).

Abstract

Extracted data

Linear discriminant analysis effect size (LEfSe) indicating differentially enriched fecal bacterial communities (with LDA score >3) at the genus level of adult females by season (n = 117).

Abstract

Extracted data

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